PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0355s0007.4.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 513aa MW: 55755.2 Da PI: 6.5483

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0355s0007.4.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.9	1.8e-15	347	379	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +C++ kTp+WR gp g+ tLCnaCG+++ k Bobra.0355s0007.4.p 347 CIQCNAHKTPQWRTGPAGPATLCNACGVRFHKG 379 89***************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA 60 LDMANNDLIP DSLLVYGEQQ EIGGAQAWRI STQQDAQPSY PPMLEQNGCL DGWRPVRECI 120 APVPLSPVSD AKCLLSIRDE TVYPASPGYH QGTGQDHQSI FTSENNFTAT INVAFNSHTP 180 QYLGHGQFPQ MSPEYQGFLS EEHGCGQPDL YLAEPQYPEL PRLELVVETR QLEMYHSRQD 240 PFQAQSIQDE FLDDMIAGDI DKFLKECTRP ADDVHVFHVE AGNPMHAEPA SRAGSAHQAD 300 GGQQRGRRPR FQNLSSTNPK SQPKNRAKGN NSSKSGGARR VGSSRRCIQC NAHKTPQWRT 360 GPAGPATLCN ACGVRFHKGQ PFKDPPARRR DKGPSKELSD HSATTARPKK PPNGEMGPME 420 SAPCAMHVAS SFEKGPLNDV STTKCIFSTV TPQSLPLHQL REAGDLVEVG RKETTPPSNQ 480 QPTALPCCPS DPLTLNKPSV LQVEPTICVP AQ*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MDAYHSQTGG RSRMPSIFET LYPGISSSQA QGINSTCQVP EAYKAEVLGP AGACFGGHEA  60
LDMANNDLIP DSLLVYGEQQ EIGGAQAWRI STQQDAQPSY PPMLEQNGCL DGWRPVRECI  120
APVPLSPVSD AKCLLSIRDE TVYPASPGYH QGTGQDHQSI FTSENNFTAT INVAFNSHTP  180
QYLGHGQFPQ MSPEYQGFLS EEHGCGQPDL YLAEPQYPEL PRLELVVETR QLEMYHSRQD  240
PFQAQSIQDE FLDDMIAGDI DKFLKECTRP ADDVHVFHVE AGNPMHAEPA SRAGSAHQAD  300
GGQQRGRRPR FQNLSSTNPK SQPKNRAKGN NSSKSGGARR VGSSRRCIQC NAHKTPQWRT  360
GPAGPATLCN ACGVRFHKGQ PFKDPPARRR DKGPSKELSD HSATTARPKK PPNGEMGPME  420
SAPCAMHVAS SFEKGPLNDV STTKCIFSTV TPQSLPLHQL REAGDLVEVG RKETTPPSNQ  480
QPTALPCCPS DPLTLNKPSV LQVEPTICVP AQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	8e-12	GATA family protein