PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0389s0015.4.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 250aa    MW: 26107.9 Da    PI: 8.6501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0389s0015.4.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-0731461026
                         GGTS--TTTTT-SS-SS CS
              zf-CCCH 10 artGtCkyGdrCkFaHg 26
                          r G C yGd+Ck++Hg
  Bobra.0389s0015.4.p 31 TR-GACTYGDSCKYSHG 46
                         55.*************9 PP
2zf-CCCH41.42.4e-13112138127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt lC +f+ tG C+yG +Ck+aHgp
  Bobra.0389s0015.4.p 112 FKTQLCTRFMNTGDCPYGLSCKYAHGP 138
                          69***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MPPICAKHDL LEPMCPRCST AFVLGSSFRW TRGACTYGDS CKYSHGDQPD GQFGGGDDGG  60
NRRQGNFGKR RGGERYDRDG PSRRGGQEHR EKHGMFNSMD DADRGPNRGL LFKTQLCTRF  120
MNTGDCPYGL SCKYAHGPEE MRQAPGQQMG MGPGNPMHMD MGPMGPLGGA LLGGLGGNDG  180
GPNGHDAHGL AKPGTGHGQP GFGDAKSGHG NAKPGYGNAE SGPPSRGATA TSRSPSRSPT  240
RQSPATCSL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-06C3H family protein