PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.182_3s0112.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1275aa MW: 139881 Da PI: 5.4096

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.182_3s0112.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	98.9	4.2e-31	82	158	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C++ l+ keyh r+++Ce++ k ++vl +g+++rfCqqC+rfh+l++fD +krsCr rL++hn rrrk+ + Bobra.182_3s0112.1.p 82 CQVESCQTSLEGGKEYHVRYRICEKCLKLNEVLREGRKERFCQQCGRFHTLDQFDGDKRSCRARLQRHNTRRRKNPQ 158 **************************************************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1275 aa Download sequence
MSGLSFASNA YDYESQGDAN AKAWKRGDIS WDPFRMEADP VKAEKGAVAT RAAPTVNTRS 60 SNRAPREVAP GPPTRGKGPF KCQVESCQTS LEGGKEYHVR YRICEKCLKL NEVLREGRKE 120 RFCQQCGRFH TLDQFDGDKR SCRARLQRHN TRRRKNPQKS AVASKRGDKP AKAGKSTGVS 180 TKKMKVERPL PHDAFEEVLE NLLSTCEPSS LCPDFSGGST GSAQEYLQDG TSGLSTPMDD 240 TSMYTDDGPF HPALGDSDLT ESMSMNFMDH PSLSLPEQVY AFPTDQGTQD ILDSFPGMNL 300 VGSVPQFEQP RHTHHTTSLS QQPLGQHTLG LLPQDPLKVP LPDLPGFDDF ASLSEGAGPR 360 PASHQPGNHS ITGALHHLEQ LPKGYPGNGY LSLGTQPAGS ASVQADSYAI HWVPVHRELH 420 VQQQPSVVVG VPMQAPPSGS EYRYINSGLL QTNSKGTRQV AMLQPLNTLQ PSLVDVNNQP 480 MHVQLPHQLL PQQQLTQQQQ QLAQEQQHLN QRQQQLAQQQ QQLTQQRLAQ QQYLQQQQQQ 540 QRQQQHLAQP QAAQPAHAQQ TRSIASALDS LVLAKAIISN PLGVSPLGVY DSGLQHSRMS 600 TKLNGVTPSQ LPRDLKMQFQ SLLGADSMEA YIRPGCVHLI LKYSVAASEG HAQEGLQGKL 660 SAREAANWLL DQPQASTADI WHRGAILVQV HDEVALIREG KVTHVLDGQA SAGVFPSLER 720 VSPLAVLNNS PDLLTLHGAN LAHTDNIVLG YCQGMEVYEK AVPKGQPAEA LQLNLGSLTR 780 NGAVQLYVVR GCFQTRFKPV LMVDNPGVVE EIKQLEDAEV ADSLDIDAFL LDLDSVLELI 840 HSLEADRSHS NEILRPYSED DMATVFKTAC RIFVYATTKG WPNVARMVAG LFDLLKKDIS 900 IIIATMHACG KLYEWTLLHL AVLSRNPLMV DMLLEWSSQF GCSFGAAIPG PKQLTPMHLA 960 VLLKDGGAMV AKLTASCPDY EQAWKATTFD GLTAYQMAVK EGIQDVVREA LRGVLAEKAA 1020 AQQLSAEEEC ETDEESLSDY EVEDEFGIDP ETGEVMDLDG ICSDMPDDEE VEAPMIDSVQ 1080 EAQTEEEKAP AQELYGRNSM PSVMAESSRG SFDENVSCLK SSKDVFEIDD SFDSPFYGKR 1140 GKEEISRKDL CQAIGLTAPE FMDPPVKGDP KRLQALSEGQ VVSTYGMGVA PTVFDRLSAS 1200 RSAILISSVG ITTLFFAVLC GQFYEMMASG RDLSSITTVL MHLCHRYLLN CSDILLHLNF 1260 CQSVRMDTLR SKSV*

Sequence ? help Back to Top

Protein Sequence Length: 1275 aa Download sequence

MSGLSFASNA YDYESQGDAN AKAWKRGDIS WDPFRMEADP VKAEKGAVAT RAAPTVNTRS  60
SNRAPREVAP GPPTRGKGPF KCQVESCQTS LEGGKEYHVR YRICEKCLKL NEVLREGRKE  120
RFCQQCGRFH TLDQFDGDKR SCRARLQRHN TRRRKNPQKS AVASKRGDKP AKAGKSTGVS  180
TKKMKVERPL PHDAFEEVLE NLLSTCEPSS LCPDFSGGST GSAQEYLQDG TSGLSTPMDD  240
TSMYTDDGPF HPALGDSDLT ESMSMNFMDH PSLSLPEQVY AFPTDQGTQD ILDSFPGMNL  300
VGSVPQFEQP RHTHHTTSLS QQPLGQHTLG LLPQDPLKVP LPDLPGFDDF ASLSEGAGPR  360
PASHQPGNHS ITGALHHLEQ LPKGYPGNGY LSLGTQPAGS ASVQADSYAI HWVPVHRELH  420
VQQQPSVVVG VPMQAPPSGS EYRYINSGLL QTNSKGTRQV AMLQPLNTLQ PSLVDVNNQP  480
MHVQLPHQLL PQQQLTQQQQ QLAQEQQHLN QRQQQLAQQQ QQLTQQRLAQ QQYLQQQQQQ  540
QRQQQHLAQP QAAQPAHAQQ TRSIASALDS LVLAKAIISN PLGVSPLGVY DSGLQHSRMS  600
TKLNGVTPSQ LPRDLKMQFQ SLLGADSMEA YIRPGCVHLI LKYSVAASEG HAQEGLQGKL  660
SAREAANWLL DQPQASTADI WHRGAILVQV HDEVALIREG KVTHVLDGQA SAGVFPSLER  720
VSPLAVLNNS PDLLTLHGAN LAHTDNIVLG YCQGMEVYEK AVPKGQPAEA LQLNLGSLTR  780
NGAVQLYVVR GCFQTRFKPV LMVDNPGVVE EIKQLEDAEV ADSLDIDAFL LDLDSVLELI  840
HSLEADRSHS NEILRPYSED DMATVFKTAC RIFVYATTKG WPNVARMVAG LFDLLKKDIS  900
IIIATMHACG KLYEWTLLHL AVLSRNPLMV DMLLEWSSQF GCSFGAAIPG PKQLTPMHLA  960
VLLKDGGAMV AKLTASCPDY EQAWKATTFD GLTAYQMAVK EGIQDVVREA LRGVLAEKAA  1020
AQQLSAEEEC ETDEESLSDY EVEDEFGIDP ETGEVMDLDG ICSDMPDDEE VEAPMIDSVQ  1080
EAQTEEEKAP AQELYGRNSM PSVMAESSRG SFDENVSCLK SSKDVFEIDD SFDSPFYGKR  1140
GKEEISRKDL CQAIGLTAPE FMDPPVKGDP KRLQALSEGQ VVSTYGMGVA PTVFDRLSAS  1200
RSAILISSVG ITTLFFAVLC GQFYEMMASG RDLSSITTVL MHLCHRYLLN CSDILLHLNF  1260
CQSVRMDTLR SKSV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	185	RRRKNPQKSAVASKRGDKPAKAGKSTGVSTKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	1e-23	SBP family protein