PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.27_2s0006.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB

Protein Properties

Length: 602aa MW: 65788.7 Da PI: 5.4855

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.27_2s0006.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.8e-11	158	201	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT + de+l av+++G ++W+ +a+++g gR + +c rwq Bobra.27_2s0006.1.p 158 EWTVDQDERLQAAVEKHGLHQWDEVAKEVGGGRLETSCLMRWQR 201 7*****************************************96 PP
2	Myb_DNA-binding	36	1.6e-11	210	251	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W + Ed +l av+q+G + W+++a+++g Rt+ q +rw+ Bobra.27_2s0006.1.p 210 RVWLPSEDRRLRAAVQQHGRN-WTAVAACLG-ERTAQQAMHRWR 251 5799*************66.*****.*********8 PP
3	Myb_DNA-binding	47.1	5.5e-15	260	305	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ l++av + G++ W+ +a ++ gRt+ +c++r+ ++l Bobra.27_2s0006.1.p 260 KGKWTDEEDQTLLQAVDEVGKK-WSVVALRVD-GRTDMSCRERYMNVL 305 79******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MRRWARAGSR GANPNLMEDG LLQLGVVLLT PGGAQGAERV GQYLPYSFGS LRTPWSQQDD 60 SQLQEAVLHQ VRSTVVNSIL DKKSEGLGSV SQLVSLEQQL QEAVQSLEAD SAGVDEIVQA 120 FTQEQWAAIP TLAGLAKTGD ACRARWLFGL RRPPADEEWT VDQDERLQAA VEKHGLHQWD 180 EVAKEVGGGR LETSCLMRWQ RNFNPAICKR VWLPSEDRRL RAAVQQHGRN WTAVAACLGE 240 RTAQQAMHRW RFVVGAGIKK GKWTDEEDQT LLQAVDEVGK KWSVVALRVD GRTDMSCRER 300 YMNVLDPSLR KGPWSLEEDW RLQETVEAFK RIFPRISWAG VSRRLPGRTD SMCTEKISAQ 360 PGWQEAWDRE LAAAGQLQDL GDRPAPSHPQ VPGEEGGVLH EAPSSVQDPD IDTLPAQADM 420 ELQGGSPGVL TGQASLAGNP SQLLCEVPGV AARGTGGARG VPRAGVSGDD GTWLEREPHG 480 GPASTTGLGS RKRAPSRAPT ALDALAFAAE LVEDGRVVDE ETTKEVVEEE KHGDKGGEEV 540 GEAEGEEEKK DKAVVRKVRT KLTCPECGRW YRQGDLVRHK NSKGHKVALL DQGGYLLSVP 600 P*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MRRWARAGSR GANPNLMEDG LLQLGVVLLT PGGAQGAERV GQYLPYSFGS LRTPWSQQDD  60
SQLQEAVLHQ VRSTVVNSIL DKKSEGLGSV SQLVSLEQQL QEAVQSLEAD SAGVDEIVQA  120
FTQEQWAAIP TLAGLAKTGD ACRARWLFGL RRPPADEEWT VDQDERLQAA VEKHGLHQWD  180
EVAKEVGGGR LETSCLMRWQ RNFNPAICKR VWLPSEDRRL RAAVQQHGRN WTAVAACLGE  240
RTAQQAMHRW RFVVGAGIKK GKWTDEEDQT LLQAVDEVGK KWSVVALRVD GRTDMSCRER  300
YMNVLDPSLR KGPWSLEEDW RLQETVEAFK RIFPRISWAG VSRRLPGRTD SMCTEKISAQ  360
PGWQEAWDRE LAAAGQLQDL GDRPAPSHPQ VPGEEGGVLH EAPSSVQDPD IDTLPAQADM  420
ELQGGSPGVL TGQASLAGNP SQLLCEVPGV AARGTGGARG VPRAGVSGDD GTWLEREPHG  480
GPASTTGLGS RKRAPSRAPT ALDALAFAAE LVEDGRVVDE ETTKEVVEEE KHGDKGGEEV  540
GEAEGEEEKK DKAVVRKVRT KLTCPECGRW YRQGDLVRHK NSKGHKVALL DQGGYLLSVP  600
P*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-33	MYB family protein