PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.4_1s0081.3.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 830aa MW: 89209.7 Da PI: 8.1869

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.4_1s0081.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	43.2	5.3e-14	54	87	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg ++p WRrgp +++LCnaCG+++ kg Bobra.4_1s0081.3.p 54 CDHCGRRNSPAWRRGPADKPHLCNACGVRFLGKG 87 9*************99999******97766 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MRQVYERMSL HGSLRSWDAG QAGRGSQLNR KRRRKETPIC ILHSTGGASA GGACDHCGRR 60 NSPAWRRGPA DKPHLCNACG VRFLGKGTLE GYMPGMKQRE DFKLPDDNLC GALDEEGGDD 120 TDSAKTTMPQ LSGKTRCRSQ RTPRRNTTPR SDMVSGPPAV ADAESDDGRA ASCYSCWADC 180 VRMALSHHPG NARKVVSFLE NACGLAMAEP LSSPHFLAEL NRVRDLYWMD KNRAMDALKH 240 LLEDEAALTL SGAEALLTLS GASPMPDDRK RDALCSTEDV NSRDSSWAVC EECGRARETV 300 CWLPVWWRYL CGDQDYSKNP ELTCKDVGDF VAPRGLPRSE VSPVIRRGIR GQGPQNRFLP 360 ASVGRSNARR TSGVADMSTE GFKVVDNPVY DGYGSPKSPR HKPFTGLRSS FTDSLSASDF 420 EFLRWLPQGW RMDFGWQRLG EPGRVSPAGL NYFAPDGSGP YQSQEDVLAR IAAQPSFRPP 480 QPGATAATFT PGPAFHRSPS GSVLVSMCGG AVSTTGEAPP GAIHKDTPMV QAEMQSYILQ 540 AETPITEAPH LARSEVSLTH LPSAAGEPSS EPSPLSAKEP AKGGPRSKKA RTKRSGPSHP 600 RQRQAKTFEV DGDFCFGVRE LVPNTFELGG WPRDLQQSIN VVYKPAKAAI DGTVPDAALR 660 GQGKMTPPQG LLQKEGMREL EPAQAHAGSN DKGRATQTTL VKHKSEPVGK LHGQALTELH 720 GPPSLLPPPR LLPPARPALG MTDELVFCPV EGPPLIVATP EGGSVANPRG LLRAVSDPSS 780 AAKAYAANAL EQAGASPEPH DLKEVDWKVL CPPGPCCAVP CLPAVTGYL*

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MRQVYERMSL HGSLRSWDAG QAGRGSQLNR KRRRKETPIC ILHSTGGASA GGACDHCGRR  60
NSPAWRRGPA DKPHLCNACG VRFLGKGTLE GYMPGMKQRE DFKLPDDNLC GALDEEGGDD  120
TDSAKTTMPQ LSGKTRCRSQ RTPRRNTTPR SDMVSGPPAV ADAESDDGRA ASCYSCWADC  180
VRMALSHHPG NARKVVSFLE NACGLAMAEP LSSPHFLAEL NRVRDLYWMD KNRAMDALKH  240
LLEDEAALTL SGAEALLTLS GASPMPDDRK RDALCSTEDV NSRDSSWAVC EECGRARETV  300
CWLPVWWRYL CGDQDYSKNP ELTCKDVGDF VAPRGLPRSE VSPVIRRGIR GQGPQNRFLP  360
ASVGRSNARR TSGVADMSTE GFKVVDNPVY DGYGSPKSPR HKPFTGLRSS FTDSLSASDF  420
EFLRWLPQGW RMDFGWQRLG EPGRVSPAGL NYFAPDGSGP YQSQEDVLAR IAAQPSFRPP  480
QPGATAATFT PGPAFHRSPS GSVLVSMCGG AVSTTGEAPP GAIHKDTPMV QAEMQSYILQ  540
AETPITEAPH LARSEVSLTH LPSAAGEPSS EPSPLSAKEP AKGGPRSKKA RTKRSGPSHP  600
RQRQAKTFEV DGDFCFGVRE LVPNTFELGG WPRDLQQSIN VVYKPAKAAI DGTVPDAALR  660
GQGKMTPPQG LLQKEGMREL EPAQAHAGSN DKGRATQTTL VKHKSEPVGK LHGQALTELH  720
GPPSLLPPPR LLPPARPALG MTDELVFCPV EGPPLIVATP EGGSVANPRG LLRAVSDPSS  780
AAKAYAANAL EQAGASPEPH DLKEVDWKVL CPPGPCCAVP CLPAVTGYL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	34	RKRRR
2	30	36	RKRRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	5e-11	GATA family protein