PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000047.1_g090.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 282aa    MW: 30150.3 Da    PI: 9.3847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000047.1_g090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-063457225
                           -S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                           k ++C+ ++    C++G++C+F H
  Cse_sc000047.1_g090.1 34 KSKPCMKYFSIEGCPFGESCHFLH 57
                           678999999999************ PP
2zf-CCCH28.72.3e-0991115226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            k +lC++++    Ck+Gd+C+FaHg
  Cse_sc000047.1_g090.1  91 KSKLCNRYSTPEGCKFGDQCNFAHG 115
                            668*********************9 PP
3zf-CCCH32.41.5e-10253276226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            kt+ C +fa+ G C +G++C+FaHg
  Cse_sc000047.1_g090.1 253 KTKMCENFAK-GSCTFGEKCHFAHG 276
                            899*******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDIRKRGFPF TKPNGAAKKF KSESESLSSG IRSKSKPCMK YFSIEGCPFG ESCHFLHFFP  60
GGYNAVAQLM NLPPISTASA TTQNGPTSAV KSKLCNRYST PEGCKFGDQC NFAHGDWELG  120
KAVAPTHEDP RTLGPIQSRP APQSTAASFG ASATAKISVD ASLAGAIIGT AGVNSKQICR  180
QTGVRLSIRD HESDPNLKNI ELEGTFDQIN EAQAMVRELI LSLSIKPAVT GPLSRPPAMH  240
HGGPSHAPKT NIKTKMCENF AKGSCTFGEK CHFAHGAAEL RK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-66C3H family protein