PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000059.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19251.1 Da    PI: 8.4845
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000059.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.63.9e-241056248
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                            i++ks rqvtfskRr+g++KKA  LSvLCd+++av++fs +gkly 
  Cse_sc000059.1_g080.1 10 LIQDKSSRQVTFSKRRTGLMKKARQLSVLCDVDIAVLVFSAQGKLYQ 56
                           699******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MGRRKLEMKL IQDKSSRQVT FSKRRTGLMK KARQLSVLCD VDIAVLVFSA QGKLYQSCNG  60
TTNSVEHILS RYERSCTEVG ERTNNGAGGQ LEVLSQCTKF RTCRELLQTV DRLVEENNSE  120
ELSVTDMTEL ELELDAALVQ TRLRKVIVRR YLFNSVSLAV IYCSICSESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-32MIKC_MADS family protein