PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000102.1_g110.2
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25765.1 Da    PI: 5.4679
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000102.1_g110.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.5e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ yss
  Cse_sc000102.1_g110.2  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFHYSS 59
                           68***********************************************96 PP
2K-box50.21.1e-17931712098
                  K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            ++a L ke+++   ++R+l Ge+L++L ++eL+qLe+ Le +l ++ +kK e+++++i++lq+k  +l een++Lr+++
  Cse_sc000102.1_g110.2  93 NYAILSKEVSERTLQLRRLRGEELHNLGIEELHQLEKSLEAGLGRVVTKKGEVIMSEINRLQEKGVQLMEENNRLRQEM 171
                            5677888888888889************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MARDKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFHYSSS  60
SMKEILEQRS LHSKNLEKLD QPSLELQLVE DANYAILSKE VSERTLQLRR LRGEELHNLG  120
IEELHQLEKS LEAGLGRVVT KKGEVIMSEI NRLQEKGVQL MEENNRLRQE MLEISNARKQ  180
IHTDTENVIG EESESSESVD DICNSAGPSQ DYENSYTSLK LGLPYTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-93MIKC_MADS family protein