PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000107.1_g180.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 130aa MW: 13488.8 Da PI: 8.2023

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000107.1_g180.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1e-13	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Cse_sc000107.1_g180.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP
2	zf-LSD1	25.8	1.7e-08	67	81	1	15
zf-LSD1 1 CggCrtlLsYPrGAp 15 CggC+tlL+Y rGA+ Cse_sc000107.1_g180.1 67 CGGCHTLLMYIRGAT 81 **************8 PP
3	zf-LSD1	41.8	1.8e-13	90	114	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C+++ Cse_sc000107.1_g180.1 90 CGNCRMLLMYQYGARSVKCAVCQFI 114 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence
MPVPLAPYPS PPAPVTTPAN GSQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TTNQVAHVNC GNCRMLLMYQ YGARSVKCAV CQFITSVGAS 120 TSATEQKFTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-51	LSD family protein