PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000222.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 409aa MW: 44330.7 Da PI: 8.0497

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000222.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.3e-12	50	75	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++rtG C yGd+C+F+H+ Cse_sc000222.1_g080.1 50 PGEPDCIFYLRTGMCGYGDSCRFNHP 75 5789*********************9 PP
2	zf-CCCH	36.8	6.6e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ Cse_sc000222.1_g080.1 95 EPDCVYFLKTGTCKYGSTCKYNHPR 119 789********************96 PP
3	zf-CCCH	35	2.5e-11	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ rtG Ck+G CkF+H++ Cse_sc000222.1_g080.1 140 EKPCPHYIRTGSCKFGVACKFHHPQ 164 689********************97 PP
4	zf-CCCH	37.7	3.6e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tG CkyG+ Ck++H++ Cse_sc000222.1_g080.1 265 PGEPECRYFMNTGNCKYGSDCKYHHPK 291 5799*********************96 PP
5	zf-CCCH	32.5	1.5e-10	312	336	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+Ck+G++Ck+ H+ Cse_sc000222.1_g080.1 312 GQAVCSYYSLYGICKFGPTCKYDHP 336 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MVDDRRVQRN GSSNSSLHNI EEAVRRLRIQ TDAKEEGSAV TGSMAYPDRP GEPDCIFYLR 60 TGMCGYGDSC RFNHPTHIDP ANQHVGGELP ERVGEPDCVY FLKTGTCKYG STCKYNHPRD 120 RRGAGPLVLN MIGLPMRQEE KPCPHYIRTG SCKFGVACKF HHPQPSIDGS SGAYGSTALV 180 SSSGVSAWSL LPRATYVSDP LLQTTQQTYL PVVLPHSQGI PPAQGWNTYM GSMSSVNSAS 240 MFGGLGSLDQ TYPLTSGTNL LPERPGEPEC RYFMNTGNCK YGSDCKYHHP KEKIAQMAAS 300 SLGPLGLPLR PGQAVCSYYS LYGICKFGPT CKYDHPLMGY SYNYGMSLPP SMPIPDPSVF 360 AYGGTFHSSV SSPSKSSKYA GAKTPSRSRS PSPEQDEQNG ASPSHSESA

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MVDDRRVQRN GSSNSSLHNI EEAVRRLRIQ TDAKEEGSAV TGSMAYPDRP GEPDCIFYLR  60
TGMCGYGDSC RFNHPTHIDP ANQHVGGELP ERVGEPDCVY FLKTGTCKYG STCKYNHPRD  120
RRGAGPLVLN MIGLPMRQEE KPCPHYIRTG SCKFGVACKF HHPQPSIDGS SGAYGSTALV  180
SSSGVSAWSL LPRATYVSDP LLQTTQQTYL PVVLPHSQGI PPAQGWNTYM GSMSSVNSAS  240
MFGGLGSLDQ TYPLTSGTNL LPERPGEPEC RYFMNTGNCK YGSDCKYHHP KEKIAQMAAS  300
SLGPLGLPLR PGQAVCSYYS LYGICKFGPT CKYDHPLMGY SYNYGMSLPP SMPIPDPSVF  360
AYGGTFHSSV SSPSKSSKYA GAKTPSRSRS PSPEQDEQNG ASPSHSESA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-109	C3H family protein