PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000229.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 140aa MW: 15738.8 Da PI: 6.5205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000229.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	5	47	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+W++eEde l+++++++G + W++I++ ++ +R++ +c+sr+++ Cse_sc000229.1_g060.1 5 GPWSPEEDEMLLNLIEKHGRN-WSLISKSIP-RRSDQSCRSRFLS 47 79***************66.*****.********986 PP
2	Myb_DNA-binding	39	1.9e-12	51	90	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+ Ede l+++++++G + W++I++ ++ g ++ +c +rw Cse_sc000229.1_g060.1 51 TFTPLEDEMLLNLIEKHGRN-WSLISKSIP-GQSDTSCALRW 90 79**************66.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence
MDQIGPWSPE EDEMLLNLIE KHGRNWSLIS KSIPRRSDQS CRSRFLSLAN TFTPLEDEML 60 LNLIEKHGRN WSLISKSIPG QSDTSCALRW DTVWKPLWNL TLKRKSSSMT NEDITIVGGV 120 SGQAPSIGDT VRDNVSQPSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-22	MYB family protein