PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000233.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 233aa    MW: 27181 Da    PI: 8.0798
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000233.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.51.9e-3711108198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            aCaaCk++r++C+++C+lap+f  e+p  f+nvhklFG++n+lk+l++++++++++am+s++yeA++r r P++G++ +i +lq q++
  Cse_sc000233.1_g020.1  11 ACAACKYQRKRCTPQCALAPHFRPEHPTVFRNVHKLFGVRNILKILEQINPHHKNEAMRSIIYEANMRDRFPIQGCLTIICNLQYQIR 98 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallk 98 
                            q+++el ++ 
  Cse_sc000233.1_g020.1  99 QAEEELYAVL 108
                            *****98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MTLKGATTTQ ACAACKYQRK RCTPQCALAP HFRPEHPTVF RNVHKLFGVR NILKILEQIN  60
PHHKNEAMRS IIYEANMRDR FPIQGCLTII CNLQYQIRQA EEELYAVLTQ LAFYKQQHER  120
QQVRSLIAFR DSLQLGIGVL QPENTSNTLL RNDATPPLPF SLYDNTNICG KPLWFQETDN  180
TAHALQKSLV LKSSNIKEVM HDHQDEIYPF FDNIDQDRQT YLDIKEDGWP FHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-41LBD family protein