PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000239.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 320aa    MW: 36446.2 Da    PI: 7.9246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000239.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.3e-151360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd +lv +++++G g+W t + + g+ R++k+c+ rw +yl
  Cse_sc000239.1_g060.1 13 KGPWTSEEDHKLVAYIEEHGHGSWCTLPLKAGLQRCGKSCRMRWTNYL 60
                           79********************************************97 PP
2Myb_DNA-binding491.4e-1566111148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ + +E++ +++++++lG++ W++Ia++++ +Rt++++k++w ++l
  Cse_sc000239.1_g060.1  66 RGKISSQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWKSHL 111
                            78999*****************.*********.***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRSPSFVKG MKKGPWTSEE DHKLVAYIEE HGHGSWCTLP LKAGLQRCGK SCRMRWTNYL  60
RPDIKRGKIS SQEEQTIIQL HALLGNRWSA IAAHLPKRTD NEIKNYWKSH LKKRLTKMGI  120
DPITHKSKTA VNTNVSHMTQ WENARLEAEA RLVCGTRVVS NFYPRIHSGS APNHTNKSSI  180
SSLLVPQPLC FDVLKAWQGL TLSKLSSLNG LETLNDQTMP IMNVLESLEP QTLKDMSTEF  240
HMNEPSKDLF NTFDNLKEDA TQHTLEVNDM IYQDNYLWEA FTNQLVNDAN CHGHLEDDSN  300
YWSNILDKLG NSSSSFSSIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.23e-84MYB family protein