PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000285.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 279aa    MW: 32395.3 Da    PI: 6.7703
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000285.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.8e-171052244
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                           +i++  +r++ f+kR++gi+K A+ELS+LCd++v++ii s ++
  Cse_sc000285.1_g040.1 10 PIKDMKKRKIAFIKRKEGIIKNAQELSTLCDVNVSMIICSDHQ 52
                           799*************************************887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRLKIPMEP IKDMKKRKIA FIKRKEGIIK NAQELSTLCD VNVSMIICSD HQESPKIFPQ  60
EDPVKLSDMI NAYKTKRFSE PGKIKSYGLC DFFTDRKNKI EDELAKVKNW NLQTKYPTPF  120
MDNSSEEQLR DFAYDLGMKI ELLKLKKMPN FQNLGLQGLL KMPLLNPNLR TMMTHIDYNN  180
NNNIIKPELS NFDGHVESFG SSNSNVDNGY YSRMPMDQNV FGNDQRMMQA VDPSLVMKSE  240
DVNNCYDGTD FGLKPETMQQ LEQPQFMEMQ RLMVSCFDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.27e-11MIKC_MADS family protein