PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000286.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 837aa MW: 93013.1 Da PI: 5.0547

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000286.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52	1.4e-16	589	634	2	47
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 e +is e+++k++ +p+++AA +L v+ ++LKriCR +GI RWP+ Cse_sc000286.1_g030.1 589 ERSISEEEIRKHYGKPMEEAAANLHVSRSTLKRICRSLGITRWPYK 634 789*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MLVGHHPLTE PSYAYLICPS NNTKGDLENM NGRGELTAAT SSRLNVLEGL KSKYNCLNEP 60 PLSAGARGYL TSLRVYGNRE VEDEPLVSSF SKLLADQNII DPQIIKEKIT HALSNLRFRD 120 PHVLVQFWSP VTVRKRCLLT TLDQPFGLGA VDEALYLYRL ESEQRMFVVD GEHREELGPP 180 GRVYRQKLPE WSLDVHKLPT GQSSNHGYIN LPVLDSGCCV GVIEIITSST YVDYAFEVHE 240 VSRALKVATI SLIFLIGYTH EENLKSPDVF ENPSLYIQIE NARRQSELEE IFLALKSICD 300 IQNIPLAQTW ALSGFSSVVA SSGNLEQSCS SFKRNCIGKT CMSTYDLPFY VRDLSMWEFH 360 EACREQHLDK SQGVVGKSMS SCGLCFCEDI TKLDEDVYPL GSHAYVNGIT SCLAIYMIGI 420 ESGVEYVIEF VLPAHHANEA DLQSLVLTVK QQIKNVPSVK LGILSPPHVI GGDPLNWNFE 480 SQPSPITILP ENEEVLPEPG NQLLLVENEL INVNDVPFSK DESEAAYVEH MEDDNLEIKL 540 IDNAAAGTSQ SVPFLNVGIE DADINEEKPE RKNLDDKSNK PKRKRKRAER SISEEEIRKH 600 YGKPMEEAAA NLHVSRSTLK RICRSLGITR WPYKNEKSDS VLKPNQTDVV IHASDRAATP 660 VLGTSIEPLG ATNIYVPVGL TEHGNQSFTL VSHKEEQTNL PDGSAQPKTT FGDQSIKITS 720 AANTVKDLPT KSTHKEYAEN TSAANTVKTL TIKATYQENT VKFPFSLLDG LAKLEELVAT 780 RFQLSPGSFR LKYADADGDM ILIACDSDLM GSVGDSRQPD HQTLIRLLVH DQNPDTN

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MLVGHHPLTE PSYAYLICPS NNTKGDLENM NGRGELTAAT SSRLNVLEGL KSKYNCLNEP  60
PLSAGARGYL TSLRVYGNRE VEDEPLVSSF SKLLADQNII DPQIIKEKIT HALSNLRFRD  120
PHVLVQFWSP VTVRKRCLLT TLDQPFGLGA VDEALYLYRL ESEQRMFVVD GEHREELGPP  180
GRVYRQKLPE WSLDVHKLPT GQSSNHGYIN LPVLDSGCCV GVIEIITSST YVDYAFEVHE  240
VSRALKVATI SLIFLIGYTH EENLKSPDVF ENPSLYIQIE NARRQSELEE IFLALKSICD  300
IQNIPLAQTW ALSGFSSVVA SSGNLEQSCS SFKRNCIGKT CMSTYDLPFY VRDLSMWEFH  360
EACREQHLDK SQGVVGKSMS SCGLCFCEDI TKLDEDVYPL GSHAYVNGIT SCLAIYMIGI  420
ESGVEYVIEF VLPAHHANEA DLQSLVLTVK QQIKNVPSVK LGILSPPHVI GGDPLNWNFE  480
SQPSPITILP ENEEVLPEPG NQLLLVENEL INVNDVPFSK DESEAAYVEH MEDDNLEIKL  540
IDNAAAGTSQ SVPFLNVGIE DADINEEKPE RKNLDDKSNK PKRKRKRAER SISEEEIRKH  600
YGKPMEEAAA NLHVSRSTLK RICRSLGITR WPYKNEKSDS VLKPNQTDVV IHASDRAATP  660
VLGTSIEPLG ATNIYVPVGL TEHGNQSFTL VSHKEEQTNL PDGSAQPKTT FGDQSIKITS  720
AANTVKDLPT KSTHKEYAEN TSAANTVKTL TIKATYQENT VKFPFSLLDG LAKLEELVAT  780
RFQLSPGSFR LKYADADGDM ILIACDSDLM GSVGDSRQPD HQTLIRLLVH DQNPDTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	582	603	KRKRKRAERSISEEEIRKHYGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-72	Nin-like family protein