PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000289.1_g110.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29188.9 Da    PI: 8.8109
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000289.1_g110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-313584150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Cse_sc000289.1_g110.1 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 84
                           79***********************************************8 PP
2K-box114.51e-371061997100
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             s++ea+a+ +qqe++kL+++i nLq+++R+++Ge+L++++ k+L++Le++Lek++++iRskKnell+++ie++qk+e+el++ n+ L
  Cse_sc000289.1_g110.1 106 GSVAEANAQFYQQEAQKLRQQIANLQNQNRNIMGESLGNMQAKDLRNLETKLEKGISRIRSKKNELLFAEIEYMQKRENELHNSNQFL 193
                            45899*********************************************************************************** PP

                  K-box  95 rkklee 100
                            r+k++e
  Cse_sc000289.1_g110.1 194 RAKIAE 199
                            ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
ETHYYQSGLL MSLPENDSGE ISPERKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE  60
LSVLCDAEVA LIVFSTRGRL YEYANNSVKG TIDRYKKACL DPPSSGSVAE ANAQFYQQEA  120
QKLRQQIANL QNQNRNIMGE SLGNMQAKDL RNLETKLEKG ISRIRSKKNE LLFAEIEYMQ  180
KRENELHNSN QFLRAKIAEN ERAQQQHMSL MPGSSDYDLV APHQPFDGRN YLQVNELQPN  240
NNYSCQDQTP LQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-121MIKC_MADS family protein