PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000324.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 328aa    MW: 36924.4 Da    PI: 7.2233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000324.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181764148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Cse_sc000324.1_g040.1 17 RGLWSPEEDEKLINYITSHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64
                           788*******************************************97 PP
2Myb_DNA-binding49.11.3e-1570112145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            rg+++ +E  l+vd+++ lG++ W+ Ia++++ gRt++++k++w+
  Cse_sc000324.1_g040.1  70 RGSFSSQEASLIVDLHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 112
                            899*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MGHGGGHTCC NKQKVKRGLW SPEEDEKLIN YITSHGHGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSSQEASL IVDLHRILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKLL  120
AHSHLSSHHL ITTFPNHKTT NIHVQLGGDH QYYDGVFDAS PIVISSYQPH IIHDQDRHVH  180
EPPRATIQPH VINLDKCFDV DPTPDLPPLP QSFIVNSSSM FDNQFATMEF LNSYDHSILK  240
PENYDFILGQ NSDHNPSIIP FKLGDQTNNI DLTTNIIPQA INAHDLNPST SSQTDYLETF  300
VPNFPSSSSS PSSSLVLPQF VVSKTNNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-70MYB family protein