PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000374.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 399aa MW: 45006.1 Da PI: 6.8057

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000374.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.8	4.9e-12	85	141	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a+ k++g Cse_sc000374.1_g040.1 85 SKFRGVSRHRWTGRYEAHLWDkGSWNAtqKKKGKQ-GAYDEEEAAARAYDLAAIKYWG 141 79*****************99889994446666.******************98 PP
2	AP2	40.5	6.9e-13	173	218	7	55
AP2 7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r+++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Cse_sc000374.1_g040.1 173 RRHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218 78999*****99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MDLITEKSEA SLRRRNSFST VSDASSTIVK RRRRCPSMLA LNEQKISSDE NLQTSMPPLV 60 DQASNIVTTT NPTTPTTPTT VKRSSKFRGV SRHRWTGRYE AHLWDKGSWN ATQKKKGKQG 120 AYDEEEAAAR AYDLAAIKYW GTSTFTNFPV TDYVKELEIM ENTTKEEYLA TLRRHHHNGR 180 WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLRTGPSS 240 VAGGGPTQSQ DQPLAQTTTT NLNPIIEEPQ FTFGSSSLPS GLNSRNQELI DTKMLMTDSD 300 SNHDSSPSPS ALSLLLRSSM FKELVEKNII AGNEEHDTKE IMKTEGNEFR GMYFNGMCPS 360 KVVMDVDEEE DAKDEIPLFR NPTQSLWNGS LNMNKPSRH

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MDLITEKSEA SLRRRNSFST VSDASSTIVK RRRRCPSMLA LNEQKISSDE NLQTSMPPLV  60
DQASNIVTTT NPTTPTTPTT VKRSSKFRGV SRHRWTGRYE AHLWDKGSWN ATQKKKGKQG  120
AYDEEEAAAR AYDLAAIKYW GTSTFTNFPV TDYVKELEIM ENTTKEEYLA TLRRHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLRTGPSS  240
VAGGGPTQSQ DQPLAQTTTT NLNPIIEEPQ FTFGSSSLPS GLNSRNQELI DTKMLMTDSD  300
SNHDSSPSPS ALSLLLRSSM FKELVEKNII AGNEEHDTKE IMKTEGNEFR GMYFNGMCPS  360
KVVMDVDEEE DAKDEIPLFR NPTQSLWNGS LNMNKPSRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	34	RRRNSFSTVSDASSTIVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-60	AP2 family protein