PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000388.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 201aa MW: 22328.2 Da PI: 9.5

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000388.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F++ L H+++H Cse_sc000388.1_g010.1 40 YACTFCKREFKSAQALGGHMNVH 62 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MWNPNPVAVN SLEENDSWEV KAFEEDTRNV MGTTWPPRSY ACTFCKREFK SAQALGGHMN 60 VHRRDRARLH HAQPSMKIPM ISSSLSSPPL IPTQELVANG SLCLLYSLQK PDTIFNSSSL 120 SSVKGNSSSL ISVSPHYNTD KYTNFPTLVA PHSFNASLSN SSNTDRSTVP TKCKSNVKVT 180 SDKKRKKTDS IIEGIDLELR L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	187	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	4e-32	C2H2 family protein