PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000424.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 691aa MW: 76731.1 Da PI: 6.5169

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000424.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	107	133	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 + lC+ a+tG C++ d+C+F+H+ Cse_sc000424.1_g060.1 107 RNLCSMVAKTGkadSCPFNDKCRFSHD 133 56899999******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MEPPTATVEP PTATAEQPPE TAEQQPRAVR KPITEMTVEE MIAKAIVPVK KEFICSAPTR 60 VSSEVNNGSS NDIVSVTPSV AVSVPVIVKK SKRQLKRERN QERQSTRNLC SMVAKTGKAD 120 SCPFNDKCRF SHDIEAYKDQ KPADLEGNCP FDSDEGPCPY GLACRYLGTH KNSDVANGTS 180 NIHKNSEVNG LKKEVQKLLW KNNMKFPKAD AKLKALGLMG PKSKKTVEAD KDESETVSNA 240 PVTNENGGGE IGQNECCLDF LEKVEDQNGV DDPRPLKRGK PLSDATCDSI GETNGVSVEE 300 KDLDTSGAQL ESLPTNDHIE TDKSLKLHPR EKKLIDFRDK LYLAPLTTVG NLPYRRVCKV 360 LGADVTCGEM AMCTNLLQGQ AAEWALLRRH VSEDLFGVQI CGAFPDTVAR AAELIEQECT 420 VDFIDINMGC PIDLVVNKGA GSALLSKPMR MKNVIRAVSS TVDIPVTIKA RTSYFEGRSR 480 IDSLIADIGQ WGASAVTIHG RSRQQRYTKQ PDWDFVYQCT RKAPDLQVLG NGDIFSFSDW 540 KKHKSDCPEL SSCMIARGAL VKPWLFTEIK EQRDWDISSG ERLNIFKDYV RFGLEHWGSD 600 TKGVETVRSF LLEWLSYTYR YVPVGLLEVL PQRLNSRPPA YYGRDDLETL MASESAVDWI 660 KISELLLGKV PDGFRFSPKH KSNAFDKAEN G

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MEPPTATVEP PTATAEQPPE TAEQQPRAVR KPITEMTVEE MIAKAIVPVK KEFICSAPTR  60
VSSEVNNGSS NDIVSVTPSV AVSVPVIVKK SKRQLKRERN QERQSTRNLC SMVAKTGKAD  120
SCPFNDKCRF SHDIEAYKDQ KPADLEGNCP FDSDEGPCPY GLACRYLGTH KNSDVANGTS  180
NIHKNSEVNG LKKEVQKLLW KNNMKFPKAD AKLKALGLMG PKSKKTVEAD KDESETVSNA  240
PVTNENGGGE IGQNECCLDF LEKVEDQNGV DDPRPLKRGK PLSDATCDSI GETNGVSVEE  300
KDLDTSGAQL ESLPTNDHIE TDKSLKLHPR EKKLIDFRDK LYLAPLTTVG NLPYRRVCKV  360
LGADVTCGEM AMCTNLLQGQ AAEWALLRRH VSEDLFGVQI CGAFPDTVAR AAELIEQECT  420
VDFIDINMGC PIDLVVNKGA GSALLSKPMR MKNVIRAVSS TVDIPVTIKA RTSYFEGRSR  480
IDSLIADIGQ WGASAVTIHG RSRQQRYTKQ PDWDFVYQCT RKAPDLQVLG NGDIFSFSDW  540
KKHKSDCPEL SSCMIARGAL VKPWLFTEIK EQRDWDISSG ERLNIFKDYV RFGLEHWGSD  600
TKGVETVRSF LLEWLSYTYR YVPVGLLEVL PQRLNSRPPA YYGRDDLETL MASESAVDWI  660
KISELLLGKV PDGFRFSPKH KSNAFDKAEN G