PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000504.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 261aa    MW: 29444.3 Da    PI: 6.8587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000504.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.7e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W+++Ed+ll + ++ +G g+W++ +++ g+ R++k+c++rw +yl
  Cse_sc000504.1_g060.1 14 RGAWSADEDKLLTNHIQTYGEGQWRSLPSKAGLLRCGKSCRLRWVNYL 61
                           89******************************99************97 PP
2Myb_DNA-binding39.61.2e-12681031047
                            HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            e +++++  +G++ W+ Ia +++ gRt++++k++w+ +
  Cse_sc000504.1_g060.1  68 EAIIRLHSIHGNR-WSHIATELP-GRTDNEIKNYWNAH 103
                            7899*********.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRTPCCSKV GLHRGAWSAD EDKLLTNHIQ TYGEGQWRSL PSKAGLLRCG KSCRLRWVNY  60
LRPEETSEAI IRLHSIHGNR WSHIATELPG RTDNEIKNYW NAHLKRTLLN PSYQLTKTKK  120
KPRKKRNLQD KKQEPTNSQQ KSTEVLKAVE PVPATSSSSG ASSSCTFDFI DEDFDLSWSN  180
LAPFLEVEST TSVMMDECFL MDGCDLVMSK DDENVMLEKL YYEYHDLLSY EGVDGYIIFQ  240
PTGLAQLATL ESLGALGGGR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-52MYB family protein