PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000588.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 1163aa MW: 131598 Da PI: 8.0383

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000588.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.3e-06	1019	1041	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C ++a+ G C+yG CkF H+ Cse_sc000588.1_g040.1 1019 RNPCYNYAK-GSCRYGMGCKFVHD 1041 679****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1163 aa Download sequence
MASTSTSSIP KSFKYDVFLS FRGEDTRNTF VSHLYKALEQ NGIQTYKDDE KIEKGETIDT 60 QLMESIEESR FFIIVFSKDY AGSSWCLDEL VKIMECRKAS EQTVYPIFYD VEPAEIRKQS 120 GAVKEAFKKR ENKEAAGKWR KALKEAADLA GWESKKTANG DESKLIQIIV DVIFQKISSS 180 NSSIDGKLVG METRIEVVLS SLELDVDDVR MIGIWGMGGG GKTTLARAVF DRVSIQFDGK 240 AFVENVREVS KSSLYGLYKL QQQVLSSVLS KENITVNSVH EGTNMMKRII RGRKVLIVLD 300 DVDDIEQLEA LAGEPEWFKL GSRVIITTRD KQVLLTHQVK FINDVNLLSH TEAICLLSKY 360 AFKSDIPIEG YEKVSKEVVR YADGLPLTIK VLGSLLCGQN VPQWKDILER LKKIPLKATM 420 EKLELSYNSL EEDYKEIFLD VACLLKGWRK DAAIIALESC GFYAVAGLRI LEQRSLVNIS 480 KDEKLGMHDH IEEMGKNIVR RVNPNKPEMH SRLWIKEEIK DILVNDSGTQ AATECITLDA 540 RGLDCKILVK GLTNMKELRF LHVSAYGSYI HQDSLHLPNA LRFLKWDYYS LPKILQAKNL 600 VGLEMEDSEI VRLRKYGGEK AWLNLRFLKF TRLKLRTLDL SVAPNLETLF LEDCWDLVEV 660 HFQVTQNLKE LCVYDCIRLE KLHMPAKSPK LVNLVLYNLE LRTLHLGITP NLEKLSLKDC 720 RDLVEVQIPA ECPKLVTLDL SECIQVAELP EEIGQLECLK ELDITGTCIT QLPESVFRMK 780 AVNSTGTKSR IPLYRGRVMI LNSSKGPKKS LHRELFMTEF FFEQLCFTHE VTKYICGTTT 840 LGTSAPLTPE EQKADKIVLS WIFTTLSDTL KARLAVTRPQ TAKKAWDLIT TIVIDNKRSR 900 TSALKAELRS LKLGDKSMEA YFSKIESFAM ILASLNSPVN DEDLVHYALE GLSDKYNQVC 960 GLIHHKDPFL DFKTTSSMLL TEEMRLKSRP VDSSSSSPIV LMTDKGILRN PSNPQVKSRN 1020 PCYNYAKGSC RYGMGCKFVH DVHAKQNVSH VEPRSKNDTE EVVIKLLNRL GISGTTTSNF 1080 SAPKHPHAPA AYHTYHSPTT YNITTPHCIR PNNNNPLGPP HLAHPLDSVI PLPQPTIHLM 1140 QPNRPIPCRL LFISALLAQQ PLY

Sequence ? help Back to Top

Protein Sequence Length: 1163 aa Download sequence

MASTSTSSIP KSFKYDVFLS FRGEDTRNTF VSHLYKALEQ NGIQTYKDDE KIEKGETIDT  60
QLMESIEESR FFIIVFSKDY AGSSWCLDEL VKIMECRKAS EQTVYPIFYD VEPAEIRKQS  120
GAVKEAFKKR ENKEAAGKWR KALKEAADLA GWESKKTANG DESKLIQIIV DVIFQKISSS  180
NSSIDGKLVG METRIEVVLS SLELDVDDVR MIGIWGMGGG GKTTLARAVF DRVSIQFDGK  240
AFVENVREVS KSSLYGLYKL QQQVLSSVLS KENITVNSVH EGTNMMKRII RGRKVLIVLD  300
DVDDIEQLEA LAGEPEWFKL GSRVIITTRD KQVLLTHQVK FINDVNLLSH TEAICLLSKY  360
AFKSDIPIEG YEKVSKEVVR YADGLPLTIK VLGSLLCGQN VPQWKDILER LKKIPLKATM  420
EKLELSYNSL EEDYKEIFLD VACLLKGWRK DAAIIALESC GFYAVAGLRI LEQRSLVNIS  480
KDEKLGMHDH IEEMGKNIVR RVNPNKPEMH SRLWIKEEIK DILVNDSGTQ AATECITLDA  540
RGLDCKILVK GLTNMKELRF LHVSAYGSYI HQDSLHLPNA LRFLKWDYYS LPKILQAKNL  600
VGLEMEDSEI VRLRKYGGEK AWLNLRFLKF TRLKLRTLDL SVAPNLETLF LEDCWDLVEV  660
HFQVTQNLKE LCVYDCIRLE KLHMPAKSPK LVNLVLYNLE LRTLHLGITP NLEKLSLKDC  720
RDLVEVQIPA ECPKLVTLDL SECIQVAELP EEIGQLECLK ELDITGTCIT QLPESVFRMK  780
AVNSTGTKSR IPLYRGRVMI LNSSKGPKKS LHRELFMTEF FFEQLCFTHE VTKYICGTTT  840
LGTSAPLTPE EQKADKIVLS WIFTTLSDTL KARLAVTRPQ TAKKAWDLIT TIVIDNKRSR  900
TSALKAELRS LKLGDKSMEA YFSKIESFAM ILASLNSPVN DEDLVHYALE GLSDKYNQVC  960
GLIHHKDPFL DFKTTSSMLL TEEMRLKSRP VDSSSSSPIV LMTDKGILRN PSNPQVKSRN  1020
PCYNYAKGSC RYGMGCKFVH DVHAKQNVSH VEPRSKNDTE EVVIKLLNRL GISGTTTSNF  1080
SAPKHPHAPA AYHTYHSPTT YNITTPHCIR PNNNNPLGPP HLAHPLDSVI PLPQPTIHLM  1140
QPNRPIPCRL LFISALLAQQ PLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	1e-64	WRKY family protein