PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000626.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GATA

Protein Properties

Length: 419aa MW: 46928.5 Da PI: 7.9611

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000626.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.7	1.4e-17	222	256	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g++tLCnaCG++y++ +l Cse_sc000626.1_g010.1 222 CLHCATDKTPQWRTGPMGPRTLCNACGVRYKSGRL 256 99*****************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MEFLQESSPY YNANNQQFTP EKRHNDSRTD HFIVDDLLDF PVDMVEEDVD IIEATSTDSS 60 TVVDSCNSSS LGSGGPEPSF VDTQLSNLFV PYDDLAEFEW LSNSVEESFS NEDLQKFQLI 120 SGIKARSKYA SDAQQFQTMA INRTNNPIFN IDMTVPSKAR TKRSRASSCN WASQVCTMSS 180 ATTMASNCDS HITSSSIAKS AMTTMKKDSN NNSSRNDDGR KCLHCATDKT PQWRTGPMGP 240 RTLCNACGVR YKSGRLVPEY RPVASPTFVL TKHSNSHRKV LELRRKKEMK NSQHHHQHFL 300 NDQNIMSHMP NRDAYLIHQR ISEGCRKCQD ESISEGCLSS VSKALVKNDR GVKTKALEKG 360 AKRCVKGISE GCLRIKSSGI REECLGRIID EVHRYTYKYL SISKDGDILD GVVTRSGSP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MEFLQESSPY YNANNQQFTP EKRHNDSRTD HFIVDDLLDF PVDMVEEDVD IIEATSTDSS  60
TVVDSCNSSS LGSGGPEPSF VDTQLSNLFV PYDDLAEFEW LSNSVEESFS NEDLQKFQLI  120
SGIKARSKYA SDAQQFQTMA INRTNNPIFN IDMTVPSKAR TKRSRASSCN WASQVCTMSS  180
ATTMASNCDS HITSSSIAKS AMTTMKKDSN NNSSRNDDGR KCLHCATDKT PQWRTGPMGP  240
RTLCNACGVR YKSGRLVPEY RPVASPTFVL TKHSNSHRKV LELRRKKEMK NSQHHHQHFL  300
NDQNIMSHMP NRDAYLIHQR ISEGCRKCQD ESISEGCLSS VSKALVKNDR GVKTKALEKG  360
AKRCVKGISE GCLRIKSSGI REECLGRIID EVHRYTYKYL SISKDGDILD GVVTRSGSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-63	GATA family protein