PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000642.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 246aa MW: 28642.4 Da PI: 6.6934

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000642.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.8e-25	28	110	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e++ ++ ++k++k lWe +s km+erg++rs +qCk+kw+nl +ryk +++e+++ ++++py+++l+ Cse_sc000642.1_g060.1 28 QWSVQETREFLMIRAELDPTFMETKRNKVLWEVISTKMKERGYNRSGEQCKCKWKNLVTRYKGFETMEQEG---MRQQFPYYNELQ 110 7******************************************************************97...56679***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MDPSHLHHMS VSVDSGGGAG GGADRFPQWS VQETREFLMI RAELDPTFME TKRNKVLWEV 60 ISTKMKERGY NRSGEQCKCK WKNLVTRYKG FETMEQEGMR QQFPYYNELQ AIFTGRMQRM 120 LWIESTEGGG SSKKRVMHLS SDDDDENEES DVEKASGSKK KKKIATSGSR GNNPPDSTTN 180 VSHLKEILED LMKQQMQMET QWMKMYEAKE EERRKIEMEW RRRMEALENE RIYELVSTAL 240 SLLVSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	223	RRKIEMEWRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-55	Trihelix family protein