PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000734.1_g090.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 191aa    MW: 22490.9 Da    PI: 6.5304
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000734.1_g090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.39.8e-221366356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            R++f++eq++ Le +Fe +++p  +++++LA+klgL  rqV +WFqNrRa+ k
  Cse_sc000734.1_g090.1 13 GRRRFSDEQIRFLEYMFETQSKPELSMKQQLANKLGLHPRQVAIWFQNRRARSK 66
                           699*************************************************99 PP
2HD-ZIP_I/II1071.4e-3414104393
            HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                            +rr+s+eq+++LE +Fe+++k e + K++la++Lgl+prqva+WFqnrRAR k++q+E +y+ L+++yd+l++  e+L++e+++L ++
  Cse_sc000734.1_g090.1  14 RRRFSDEQIRFLEYMFETQSKPELSMKQQLANKLGLHPRQVAIWFQNRRARSKSRQTELEYNNLQQNYDTLVSMSESLKEENQALLNQ 101
                            79************************************************************************************99 PP

            HD-ZIP_I/II  91 lke 93 
                            l++
  Cse_sc000734.1_g090.1 102 LQT 104
                            986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MLSIETTKNK NEGRRRFSDE QIRFLEYMFE TQSKPELSMK QQLANKLGLH PRQVAIWFQN  60
RRARSKSRQT ELEYNNLQQN YDTLVSMSES LKEENQALLN QLQTLRQLAN TQQGNITTRH  120
DFTNMSRNKE LSGTISLSMT NNSTLLSENY NHQIVDPFKD NTSFAQDDRR ILDTEDQSGS  180
LVPDHPNWWE F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-33HD-ZIP family protein