PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000869.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27215.9 Da    PI: 5.0612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000869.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-23957149
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           k ie+k + qvtfskRr+g++KKA  LSvLCd+++av++fs +gklye 
  Cse_sc000869.1_g040.1  9 KLIEDKNKCQVTFSKRRTGLMKKARHLSVLCDVDIAVLVFSANGKLYES 57
                           569********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRRKLEMKL IEDKNKCQVT FSKRRTGLMK KARHLSVLCD VDIAVLVFSA NGKLYESCSG  60
SSSNSVEHIL SRYERSITEA GERTNNGAGG QLEVLSQCTK FRTCKELLQT VDRLVEENNS  120
EELSVTDMTE LELELDAALV QTRLRKMLDG GGMLHISPGP KVWILASWGY LSGTEMEILT  180
QLMMEYMSAL QEEEKKLTED KGELENQVAS AKQLQNDDGG GGLNNLATNQ TNSPQHLVTL  240
PLFNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.17e-29MIKC_MADS family protein