PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000923.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29640.9 Da    PI: 9.3823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000923.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.28.8e-131450642
                           HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           +  r +t+ kR+ gi+KKA+E  +LCd++  +ii  +
  Cse_sc000923.1_g040.1 14 EKTRITTYQKRKLGIIKKASEFTILCDVDTVMIITPP 50
                           56799************************99999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRAKLRMEL IVKEKTRITT YQKRKLGIIK KASEFTILCD VDTVMIITPP NSNEPEVWPE  60
NPDQIKKGIA SFKSKKDRKK KIEDELMKAR RRNMEAKYST WFDALDSLPE HHLRQFVAML  120
ELKERDARDR LEFKKRNMNI IYPYMLNFGN KPSMLHFAGL GLGLGLGLGN PDPELNHAHQ  180
MNPNHMPMNR EPMAAYGYPS VDYGGNVYDN NLNNSFLSFQ QQPHLVQGGM LSKFEPQENE  240
SHVNNGGAAS DYVIDDRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.18e-20M-type_MADS family protein