PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000979.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LSD

Protein Properties

Length: 641aa MW: 70335.4 Da PI: 4.0899

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000979.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	29.9	9.4e-10	550	571	1	22
zf-LSD1 1 CggCrtlLsYPrGApsVRCalC 22 Cg+Cr lLsYPrGA++V Ca+C Cse_sc000979.1_g020.1 550 CGSCRLLLSYPRGARYVECACC 571 ********************** PP
2	zf-LSD1	38.2	2.3e-12	588	610	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg+C++lL+YP+GAp +RC +C Cse_sc000979.1_g020.1 588 CGSCDVLLMYPYGAPKIRCNNCK 610 **********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MTEQQQHDGA PPENHNTVTE EDQPLTDLSP PSPLPPTPPL PSTNLDMEEQ DAEDDGPPPG 60 WDNKHQLKED TEQALEPAAV SAVSSDMKME DVRQDVQNEE GPQPGSEAHS SPVPELVSSD 120 ITVDQQDSED EGPPPGWDSK SQSKPKSQLE LPSTPPSGHT EADDVQKDAQ KDDGLPSQSQ 180 DHASQLSELV VSDMQVEQHD SEDEGPPPGW DSKCQPEPES QLARPTTAQS DITMMDVQQD 240 AENEEGPEPR SQAHPSPPPE VVPSDIKMDQ QDSEDEGPPP GWDSKCQPGS NPTTPRSDTK 300 TEDIQHSRNE DGSQPQPLAD PAAAPEPVPS DTQVEQQDSE DDGPPPGWDS KCESEPKVQE 360 ACPSNPRSDT KTGDVKLSVQ NEDGPAPQSL SRPIPAPELV ISDTNVEEQD SEDDGPPPGW 420 DSKCQPEQKL QKTCSSDSKM EDGQRDMHDD EGPPPGWEPT PPQESQAHLR VSSPVVQSGK 480 MDSEQNNVKA VKEIPQPPSR QQSITPIEPQ VVMSKRPRSI ERSITPIEPQ IPMPKRQRSL 540 DNPEMGQMVC GSCRLLLSYP RGARYVECAC CLEENYVLEE HEVGRVACGS CDVLLMYPYG 600 APKIRCNNCK FETEIGDQNR RPPLSEHKKR ARQHLRRVQA S

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MTEQQQHDGA PPENHNTVTE EDQPLTDLSP PSPLPPTPPL PSTNLDMEEQ DAEDDGPPPG  60
WDNKHQLKED TEQALEPAAV SAVSSDMKME DVRQDVQNEE GPQPGSEAHS SPVPELVSSD  120
ITVDQQDSED EGPPPGWDSK SQSKPKSQLE LPSTPPSGHT EADDVQKDAQ KDDGLPSQSQ  180
DHASQLSELV VSDMQVEQHD SEDEGPPPGW DSKCQPEPES QLARPTTAQS DITMMDVQQD  240
AENEEGPEPR SQAHPSPPPE VVPSDIKMDQ QDSEDEGPPP GWDSKCQPGS NPTTPRSDTK  300
TEDIQHSRNE DGSQPQPLAD PAAAPEPVPS DTQVEQQDSE DDGPPPGWDS KCESEPKVQE  360
ACPSNPRSDT KTGDVKLSVQ NEDGPAPQSL SRPIPAPELV ISDTNVEEQD SEDDGPPPGW  420
DSKCQPEQKL QKTCSSDSKM EDGQRDMHDD EGPPPGWEPT PPQESQAHLR VSSPVVQSGK  480
MDSEQNNVKA VKEIPQPPSR QQSITPIEPQ VVMSKRPRSI ERSITPIEPQ IPMPKRQRSL  540
DNPEMGQMVC GSCRLLLSYP RGARYVECAC CLEENYVLEE HEVGRVACGS CDVLLMYPYG  600
APKIRCNNCK FETEIGDQNR RPPLSEHKKR ARQHLRRVQA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	7e-30	LSD family protein