PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001023.1_g110.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 1152aa MW: 129177 Da PI: 7.7639

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001023.1_g110.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	1037	1062	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC C+ sF++k +L+ H ++ + Cse_sc001023.1_g110.1 1037 HKCDieGCKLSFKTKTELRLHRKNrC 1062 789999***************99866 PP

Sequence ? help Back to Top
Protein Sequence Length: 1152 aa Download sequence
MRDVSIPDWL KELPLAPVFY PTDTEFADPI AYISKIEKQA SAFGICKVIP PLPKPSKKYV 60 VNNLNKSLLK SPELGRNVNV GKDNRAVFTT RHQELGCDNG KGGKEVNKQV WQSGEIYTLE 120 QYELKSKVFA KSQLGVVKDV TPLDVESRFW KAASEKPIYI EYANDVPGSG FGEPVSASRF 180 MRKRRRRRRN FKRYGNDSDE RKGERESVKC SGSSDVDVLK KDTSLVDDDR EVEGTAGWKL 240 SNCPWNLQVI ARSPGSLTRF MPDDIPGVTS PMVYLGMLFS WFAWHVEDHE LHSLNFLHIG 300 APKTWYSVPG DYAFTFEEVI RSKAYGGIDR LAALTLLGEK TTLLSPETVV ASGIPCCRLV 360 QYPGEFVVTF PRAYHIGFSH GFNCGEAANF GTPKWLSVAK GAAVRRAAMN FLPMLSHQQL 420 LYLLTMSFIP RVPKSLLPGK RSSRSKDRQK EERELLVKKE FIEDILKENK LINHILQRNS 480 AYHAVLWDLE SLSPSVITES DLKNIDDIHV KNDNNLDTEI VVNIEDEDMS SDFQIDSGSL 540 PCVACGVLGY PFMSVIQPTT KMLIDEMPVT GHGVELVNAE DRSLEASTNS CEMNVEKGWN 600 ISNGFLRPQI FCLKHASKVI ELLDSMGGAK LLIICHSDFL KIKIQVSAIA EQIGNTFRYN 660 EVRLDEATQD DLDLINLAID NEQDNDSVED WTLKLNVNLR QSVKLRPKLS PDKIHNALII 720 DALFADTPTS SVDSHAMIFR WNATKSRSNR KLNSSIKKFS KTVDVEVIDN ISEAEILKKG 780 GSSIQYSRRK FKSKRQDSVA ILSKNRNEDN LLVSGDLSTP GNPDTQQEKV DSVLSQVGVD 840 IIAPPVAEDT EPHTSMEMEG GSESCATTLE KSGTENGEES DLQNEISFVA TDDNGSLEQG 900 SEDGLMQEDT ELTKDGGSSA DEPVIDSNDK VKKDHTTDND ENNHVSNSKS GSKRKREVEL 960 LQTEEKSDFD GFVKSPCEGL RPRGGKESLK GGINISTKTV PEKPTKKSKP SNVTEKHAKK 1020 TKASNVKTPE KTEHKSHKCD IEGCKLSFKT KTELRLHRKN RCPHVGCGKK FKSHRYAVIH 1080 VRVHEDHRPL KCTWKGCKMT FKWAWARTEH IRVHTGERPY KCSVEGCGLN FRFVSDFSRH 1140 RRKTGHNVHV KS

Sequence ? help Back to Top

Protein Sequence Length: 1152 aa Download sequence

MRDVSIPDWL KELPLAPVFY PTDTEFADPI AYISKIEKQA SAFGICKVIP PLPKPSKKYV  60
VNNLNKSLLK SPELGRNVNV GKDNRAVFTT RHQELGCDNG KGGKEVNKQV WQSGEIYTLE  120
QYELKSKVFA KSQLGVVKDV TPLDVESRFW KAASEKPIYI EYANDVPGSG FGEPVSASRF  180
MRKRRRRRRN FKRYGNDSDE RKGERESVKC SGSSDVDVLK KDTSLVDDDR EVEGTAGWKL  240
SNCPWNLQVI ARSPGSLTRF MPDDIPGVTS PMVYLGMLFS WFAWHVEDHE LHSLNFLHIG  300
APKTWYSVPG DYAFTFEEVI RSKAYGGIDR LAALTLLGEK TTLLSPETVV ASGIPCCRLV  360
QYPGEFVVTF PRAYHIGFSH GFNCGEAANF GTPKWLSVAK GAAVRRAAMN FLPMLSHQQL  420
LYLLTMSFIP RVPKSLLPGK RSSRSKDRQK EERELLVKKE FIEDILKENK LINHILQRNS  480
AYHAVLWDLE SLSPSVITES DLKNIDDIHV KNDNNLDTEI VVNIEDEDMS SDFQIDSGSL  540
PCVACGVLGY PFMSVIQPTT KMLIDEMPVT GHGVELVNAE DRSLEASTNS CEMNVEKGWN  600
ISNGFLRPQI FCLKHASKVI ELLDSMGGAK LLIICHSDFL KIKIQVSAIA EQIGNTFRYN  660
EVRLDEATQD DLDLINLAID NEQDNDSVED WTLKLNVNLR QSVKLRPKLS PDKIHNALII  720
DALFADTPTS SVDSHAMIFR WNATKSRSNR KLNSSIKKFS KTVDVEVIDN ISEAEILKKG  780
GSSIQYSRRK FKSKRQDSVA ILSKNRNEDN LLVSGDLSTP GNPDTQQEKV DSVLSQVGVD  840
IIAPPVAEDT EPHTSMEMEG GSESCATTLE KSGTENGEES DLQNEISFVA TDDNGSLEQG  900
SEDGLMQEDT ELTKDGGSSA DEPVIDSNDK VKKDHTTDND ENNHVSNSKS GSKRKREVEL  960
LQTEEKSDFD GFVKSPCEGL RPRGGKESLK GGINISTKTV PEKPTKKSKP SNVTEKHAKK  1020
TKASNVKTPE KTEHKSHKCD IEGCKLSFKT KTELRLHRKN RCPHVGCGKK FKSHRYAVIH  1080
VRVHEDHRPL KCTWKGCKMT FKWAWARTEH IRVHTGERPY KCSVEGCGLN FRFVSDFSRH  1140
RRKTGHNVHV KS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	186	RKRRR
2	182	188	RKRRRRR
3	182	189	RKRRRRRR
4	183	188	KRRRRR
5	183	189	RKRRRRR
6	184	189	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein