PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001036.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 208aa MW: 23084.1 Da PI: 7.0593

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001036.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.5	1.1e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar++dPvyG+v++i++lqqq+ Cse_sc001036.1_g060.1 10 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIKDPVYGCVAHIFALQQQV 97 7***********************99******************************************************** PP DUF260 88 eqlkaelallkee 100 ++l+++l ++k++ Cse_sc001036.1_g060.1 98 ACLQTQLMQIKAQ 110 *****998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MSTGAGSGSP CGACKFLRRK CAADCIFAPY FCSEQGPARF AAIHKVFGAS NVSKLLLHVP 60 VADRCEAVVT IAYEAQARIK DPVYGCVAHI FALQQQVACL QTQLMQIKAQ MAQGFFDSRN 120 IETQWPGSAV YQNYPTFTNI MNGNISPQSS LESIDHNNEG TSDQEKQSRD DVDHYHDISF 180 QQVNNNKKRP FPSDLGELQE LAVRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	3e-77	LBD family protein