PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001145.1_g120.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 216aa MW: 23081.1 Da PI: 5.3681

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001145.1_g120.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.3e-07	94	117	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC+ f++ GtC+y +C+FaH+ Cse_sc001145.1_g120.1 94 KAKLCCKFRA-GTCPYITNCNFAHS 117 778*****.***********8 PP
2	zf-CCCH	17.7	6.4e-06	144	165	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+ C yGd+C+F H+ Cse_sc001145.1_g120.1 144 NCKKFYTEEGCLYGDNCTFLHD 165 7********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MDYGRESGNV FQIVAGGSKG GGDYWWDQPV WATEDEYGVW DREAFVDNNL NSNYDGRQSK 60 TRSGSETPDK KRYGQGGDTQ ATSRSKAIGK MFFKAKLCCK FRAGTCPYIT NCNFAHSNEE 120 LRRPPPNWQE IVAAHEEERG VTGNCKKFYT EEGCLYGDNC TFLHDEQSKA RESVVISLGP 180 GSGGGYDGGG GGSRGGYGGG GGVVSGGGGG SGANDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	2e-50	C3H family protein