PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001215.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 621aa MW: 68962 Da PI: 5.0661

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001215.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2.1e-08	558	612	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +++WT+ E+e+l+++v+++ + Wk I kgRt ++k++w++ Cse_sc001215.1_g030.1 558 KLPWTKTEEEILKEGVQRYASAnnkgiPWKEILDFGRnvfhKGRTTIDLKDKWRN 612 689**************999999999*9999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MAAKGSTAPA FVWNWVIEAL ASSEKADAST LIGLVNTAPA ISGDAGKDAR ELVSLRILEN 60 LFAHGNDTDA DSAQNTKVSF DASERCEDVL NRILHKTPEP MLKLEQDKWD VRPFLMHKRS 120 SMPKCLLIKL KEAMLESSNP LLSSLKEKSK VSNVSEDTSP AKDDPSLNFS KDKSKVQENL 180 SPETDQVQNS AGGTPEHAGI QEEDTSPTKD DLVLNDPRKE TNTVQEKVSQ GADQEEKSSG 240 GTTEYAGLEN CEMFIERPPE GPCRNQMIED GAEANILRAD DHLPRDTYTE GHDKRVSVDS 300 MEGLEFVVTI QQNSERDNDE RTDIAAEKEA FLKSQCTTSQ DSFAMTEWSQ IDLCTKCNEG 360 GQLLVCSSDA CVIRVHESCL GSSVTLDESD KFFCPFCAYS RAISKCMEAK RKVSLARKDL 420 QAFTSFNVNH MLNKSSEKQS DLQKKGTESF PETTEGDGDG DTASRANDIC CKSNEQDSAL 480 PDPLIPIVND EMHIATECLH QQTTELPKNP IPEPSTPTKK CKRKESQNST EPSCSRTLRK 540 RKAQHTPPAP LPSLRRNKLP WTKTEEEILK EGVQRYASAN NKGIPWKEIL DFGRNVFHKG 600 RTTIDLKDKW RNICKGNTNV K

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MAAKGSTAPA FVWNWVIEAL ASSEKADAST LIGLVNTAPA ISGDAGKDAR ELVSLRILEN  60
LFAHGNDTDA DSAQNTKVSF DASERCEDVL NRILHKTPEP MLKLEQDKWD VRPFLMHKRS  120
SMPKCLLIKL KEAMLESSNP LLSSLKEKSK VSNVSEDTSP AKDDPSLNFS KDKSKVQENL  180
SPETDQVQNS AGGTPEHAGI QEEDTSPTKD DLVLNDPRKE TNTVQEKVSQ GADQEEKSSG  240
GTTEYAGLEN CEMFIERPPE GPCRNQMIED GAEANILRAD DHLPRDTYTE GHDKRVSVDS  300
MEGLEFVVTI QQNSERDNDE RTDIAAEKEA FLKSQCTTSQ DSFAMTEWSQ IDLCTKCNEG  360
GQLLVCSSDA CVIRVHESCL GSSVTLDESD KFFCPFCAYS RAISKCMEAK RKVSLARKDL  420
QAFTSFNVNH MLNKSSEKQS DLQKKGTESF PETTEGDGDG DTASRANDIC CKSNEQDSAL  480
PDPLIPIVND EMHIATECLH QQTTELPKNP IPEPSTPTKK CKRKESQNST EPSCSRTLRK  540
RKAQHTPPAP LPSLRRNKLP WTKTEEEILK EGVQRYASAN NKGIPWKEIL DFGRNVFHKG  600
RTTIDLKDKW RNICKGNTNV K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	522	542	KRKESQNSTEPSCSRTLRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-07	MYB_related family protein