PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001232.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 879aa MW: 99544.4 Da PI: 8.3091

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001232.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	38.5	2.2e-12	608	653	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++++e ++k+ ++pi++AAk+Lgv+ ++LKr CR + + WP k Cse_sc001232.1_g010.1 608 DSLTMEAVKKHVEKPIAEAAKSLGVSRSTLKRFCRDNKMTSWPLPK 653 689****************************************765 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MGSCSHLQSL NSSDEGKTPG FGSVSSIDVV GINELSKNIS FQQPIQSVSG DSRYLTRLAV 60 FRNDDELFQS ESAQPMITSG LEPITIFVEE LLPQHETPMK HKPFGFELGE DKINPHKKII 120 QDKIIAALKQ LTLREQHVIV QFWSHAHVVG KHQVLTTMDQ PFGLGVITEQ LTSYRKESHH 180 NLDVVDNDHE EEELSPPARV FRRRLPEWTL DVANYSPKQF PQKDCAIRHG LLGYLALPVV 240 DLFTSSCVGV LEILTSSKYI SYAYEIQQVQ NTLKTANLIT TQAVDCPTHR QNELEKIHNI 300 LKFLCNTHQL PLAQTWAMSP LTTFASHDQI LKKSCNSFHT RCLGKVCMST DALPYYVRDL 360 RLWSFRKACK EQHLDKSCSF VGRALLSHGS CFCEDVTKLS QEEYPLVHYA LMSELSSCFA 420 IFLHSIESNN DYVLEFFLPL HREDGRYIHK LVQTLKHSIE IASGFELGDT IEVVGPPMDL 480 SANIEPDNIQ TSSYLMDTNP QSTIISSITT TNTKILETVS SDSESIVADV AKTSYTHVIN 540 QLSPTQDFLN NNGGTITSTE IVVHDDVIRD ADNTTSNRDM IMQITSETIT DAGEKSNRLK 600 RGRKRKIDSL TMEAVKKHVE KPIAEAAKSL GVSRSTLKRF CRDNKMTSWP LPKHNKKTAR 660 ITDSKLSQTS RSKQNLQQTS NVRFGLFTVV TLLVRVKRWS CASKRHGFSG NWWSCGKHSH 720 LPFKSDSIYQ VARLMVFLQR WKNKKSTRHA MQKRDHLEST EKPLNKLNVD RKLPDSNLFY 780 ASPNQIKSNE VSDTRKVTVK ATFKDDMIKI QIPILSRLFE LQNEVARRTK LKSAGFRLKY 840 KDEDGDLILL ACDADLQNLL GGYSTSNNTT IRLIIQADD

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MGSCSHLQSL NSSDEGKTPG FGSVSSIDVV GINELSKNIS FQQPIQSVSG DSRYLTRLAV  60
FRNDDELFQS ESAQPMITSG LEPITIFVEE LLPQHETPMK HKPFGFELGE DKINPHKKII  120
QDKIIAALKQ LTLREQHVIV QFWSHAHVVG KHQVLTTMDQ PFGLGVITEQ LTSYRKESHH  180
NLDVVDNDHE EEELSPPARV FRRRLPEWTL DVANYSPKQF PQKDCAIRHG LLGYLALPVV  240
DLFTSSCVGV LEILTSSKYI SYAYEIQQVQ NTLKTANLIT TQAVDCPTHR QNELEKIHNI  300
LKFLCNTHQL PLAQTWAMSP LTTFASHDQI LKKSCNSFHT RCLGKVCMST DALPYYVRDL  360
RLWSFRKACK EQHLDKSCSF VGRALLSHGS CFCEDVTKLS QEEYPLVHYA LMSELSSCFA  420
IFLHSIESNN DYVLEFFLPL HREDGRYIHK LVQTLKHSIE IASGFELGDT IEVVGPPMDL  480
SANIEPDNIQ TSSYLMDTNP QSTIISSITT TNTKILETVS SDSESIVADV AKTSYTHVIN  540
QLSPTQDFLN NNGGTITSTE IVVHDDVIRD ADNTTSNRDM IMQITSETIT DAGEKSNRLK  600
RGRKRKIDSL TMEAVKKHVE KPIAEAAKSL GVSRSTLKRF CRDNKMTSWP LPKHNKKTAR  660
ITDSKLSQTS RSKQNLQQTS NVRFGLFTVV TLLVRVKRWS CASKRHGFSG NWWSCGKHSH  720
LPFKSDSIYQ VARLMVFLQR WKNKKSTRHA MQKRDHLEST EKPLNKLNVD RKLPDSNLFY  780
ASPNQIKSNE VSDTRKVTVK ATFKDDMIKI QIPILSRLFE LQNEVARRTK LKSAGFRLKY  840
KDEDGDLILL ACDADLQNLL GGYSTSNNTT IRLIIQADD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-83	Nin-like family protein