PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001247.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NAC
Protein Properties Length: 246aa    MW: 28350 Da    PI: 8.5751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001247.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.25.2e-39121405128
                    NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                            +rF Pt+eel+++yL +k+++ + +++++vi+ v++y+++P++Lp+     ++ ++++w+fF++r++++a+g r++r+t+sgyWkatg
  Cse_sc001247.1_g050.1  12 LRFYPTEEELISFYLVNKLQDLRtNTINRVIPVVHVYDHNPSHLPNlageLCRRDTEQWFFFVPRQEREAQGGRPSRTTASGYWKATG 99 
                            69*******************994555667***************645654444777******************************* PP

                    NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +   v+s++++++g+kkt+vfy+g++++ +kt W m+eyr+
  Cse_sc001247.1_g050.1 100 SPSYVYSSDNKVIGVKKTMVFYEGKSRSVKKTVWKMNEYRA 140
                            ***************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MAQDDYQPHS VLRFYPTEEE LISFYLVNKL QDLRTNTINR VIPVVHVYDH NPSHLPNLAG  60
ELCRRDTEQW FFFVPRQERE AQGGRPSRTT ASGYWKATGS PSYVYSSDNK VIGVKKTMVF  120
YEGKSRSVKK TVWKMNEYRA IKEEADDTST FPVPKLRHEL SLCRVYVVSG TTRAFDRRPL  180
GLGPMERVHP EPSRAASASR SILQTYRIAG TSECPRPESP CPDQDTIDFM DNVVLEPLKE  240
WQNFAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-81NAC family protein