PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001335.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Whirly
Protein Properties Length: 235aa    MW: 26500.6 Da    PI: 10.1209
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001335.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly68.61.1e-2177133157
                 Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfal 57 
                            s+yk+kaal+v+++ p+f  ldsg++kl+++G++ll++a+a+++r+ydW++kq+  +
  Cse_sc001335.1_g050.1  77 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFILLQFAPAAGVRQYDWSRKQVPLM 133
                            7****************************************************8665 PP
2Whirly21.15.2e-07167196110139
                 Whirly 110 svtnslvkgnesfsvPvskaefavlrsllv 139
                             v+n+l++ +es+++Pv+kaefa+l s+++
  Cse_sc001335.1_g050.1 167 GVQNKLINMDESIYIPVTKAEFAILVSAFN 196
                            599**********************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MLNLSIPSTP QGLTPKSCIT QNPKSLSFLN PQITKFINTK PSTKHILKCQ YSDQQQQRPD  60
VSSYTQPQAP KVFIGHSIYK GKAALTVEPR PPEFAPLDSG AFKLTKEGFI LLQFAPAAGV  120
RQYDWSRKQV PLMSWYSRYP LLKSEVLLVL VQGIHVNSFM TLLKEKGVQN KLINMDESIY  180
IPVTKAEFAI LVSAFNFAVP YLLGWHTFVN SIRPEDTTRS NNANLRSGAD LEWSR