PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001380.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 224aa MW: 25370.7 Da PI: 10.1344

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001380.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.1	5e-17	63	166	5	88
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkek 72 eYA+e GF+vr+ ++++k++++ + f+Cs+eg + + k++ ++ +r +ra++r+gCka l +++++ Cse_sc001380.1_g040.1 63 EYAREGGFEVRRGGQSNRKKKQNPDLKYFCCSREGVKPSPKDDiskkdksktdtpssdiaevvKVIKRWKRASQRCGCKALLCLRQTS 150 8**********9999999999*********99999889999********9998888999*************** PP FAR1 73 dgkwevtkleleHnHe 88 ++k++v+++ ++HnH+ Cse_sc001380.1_g040.1 151 ENKFVVYTFFEKHNHH 166 *************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MSNSLEDDSM QGEPSTPRST NIVQDNVVDA ESVTQVGSYQ PTPPGSKFWI PEAKNKPRGG 60 NSEYAREGGF EVRRGGQSNR KKKQNPDLKY FCCSREGVKP SPKDDISKKD KSKTDTPSSD 120 IAEVVKVIKR WKRASQRCGC KALLCLRQTS ENKFVVYTFF EKHNHHSLVH ENDYKYLRAA 180 RKLTFSKQHL LRQLSNANIG PTRAWKVMIE MYGGIENIGE GKKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	111	RKKKQNPDLKYFCCSREGVKPSPKDDISKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-10	FAR1 family protein