PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001440.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 805aa MW: 92649.4 Da PI: 8.2133

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001440.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.6	1.6e-07	117	197	7	89
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 A+++GF +++ ksk+ g ++ +f C+++g++++e + ++ +r++++++++C kl k k + w + HnH++ Cse_sc001440.1_g020.1 117 AESIGFVIVIGKSKTD--RGYKYSIEFLCYRHGTSSREGLE-DELQRHTSTDKINCPFKLLAKFIKrFNGWILRVKCPGHNHNF 197 889*******9998..5667***********9999.888999999********9997888988888899*86 PP

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence
MNCTNLHKSH KTAQVSQNCT SLTTAQVLNC TSTRLTISQV SQVTRFEHEC GESNNTNNNQ 60 PTTPTTSGPE QQQTSGPELQ QVVQNNNKQV KSNNNNQPPC LVFGTEVDLI NWVRSTAESI 120 GFVIVIGKSK TDRGYKYSIE FLCYRHGTSS REGLEDELQR HTSTDKINCP FKLLAKFIKR 180 FNGWILRVKC PGHNHNFPDS LHGFSQAMQL QESELLFVRQ MTKQHVAPRI ILSSLKEMDP 240 NNVSTIKTVY NAQEKIRRDS RGDLTPIQLL LVHLQRKGYT YYPRINDHTN ELDEIFFVHP 300 TSYALWTTYS EIMLMDSTYN TNMFKLPFLT VVGVTPTNTT FSMAFSFLDK EKKPNFKWVH 360 RFDTLKEYES VRLTWDSMIT APTEEVFRHY YQHLHGLLVR KKGLPIPLDF VDNFWRTLSV 420 PWPVVRNTQE PNEPEYPQEP QGPEEPEYFS CQDEVQKFQS VYTRASSFVK KNMLNRLRGI 480 YAPESVSAQQ PAVKESNRGR PSAKANKSKS KPNIPDLNEE PPTRHRRSYT KPKKVPEVNK 540 ESARHSSYVG EPSNVQDLNE RPNEGPSEGD LRHPLSWPSA RNVREPSNVP DLNEGPNEGP 600 SEGDLRHHLY VPDYFSEYCM AEIPTLFRRW ILGIFNVDGD GNCGYRAVAV GLGHQQEMWP 660 RIRSLAREEV DNNEEVYREM WGHSFTSTRN SMNWFNGAAP RRYWMTMPEM GVVIATALNR 720 HIVCITNSQS LLCLPLRGSP DSAEILSPVV ILRVGNDQCA HFVLAVLDEN SPLPYNHPQW 780 RYFRNAVAAP WEHVFTQRQR MFRYT

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence

MNCTNLHKSH KTAQVSQNCT SLTTAQVLNC TSTRLTISQV SQVTRFEHEC GESNNTNNNQ  60
PTTPTTSGPE QQQTSGPELQ QVVQNNNKQV KSNNNNQPPC LVFGTEVDLI NWVRSTAESI  120
GFVIVIGKSK TDRGYKYSIE FLCYRHGTSS REGLEDELQR HTSTDKINCP FKLLAKFIKR  180
FNGWILRVKC PGHNHNFPDS LHGFSQAMQL QESELLFVRQ MTKQHVAPRI ILSSLKEMDP  240
NNVSTIKTVY NAQEKIRRDS RGDLTPIQLL LVHLQRKGYT YYPRINDHTN ELDEIFFVHP  300
TSYALWTTYS EIMLMDSTYN TNMFKLPFLT VVGVTPTNTT FSMAFSFLDK EKKPNFKWVH  360
RFDTLKEYES VRLTWDSMIT APTEEVFRHY YQHLHGLLVR KKGLPIPLDF VDNFWRTLSV  420
PWPVVRNTQE PNEPEYPQEP QGPEEPEYFS CQDEVQKFQS VYTRASSFVK KNMLNRLRGI  480
YAPESVSAQQ PAVKESNRGR PSAKANKSKS KPNIPDLNEE PPTRHRRSYT KPKKVPEVNK  540
ESARHSSYVG EPSNVQDLNE RPNEGPSEGD LRHPLSWPSA RNVREPSNVP DLNEGPNEGP  600
SEGDLRHHLY VPDYFSEYCM AEIPTLFRRW ILGIFNVDGD GNCGYRAVAV GLGHQQEMWP  660
RIRSLAREEV DNNEEVYREM WGHSFTSTRN SMNWFNGAAP RRYWMTMPEM GVVIATALNR  720
HIVCITNSQS LLCLPLRGSP DSAEILSPVV ILRVGNDQCA HFVLAVLDEN SPLPYNHPQW  780
RYFRNAVAAP WEHVFTQRQR MFRYT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	260	EKIRRDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-10	FAR1 family protein