PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001465.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 190aa MW: 21748.9 Da PI: 10.6049

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001465.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.8	1.4e-13	52	93	1	42
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 +CqvegC+ dl++ak+yhr+h++C sk+p+v+ g + f Cse_sc001465.1_g080.1 52 CCQVEGCNLDLASAKDYHRQHRICANNSKSPKVVKLGWNVDF 93 6********************************988776555 PP
2	SBP	43.4	9e-14	130	162	46	78
TSSEEETTT--SS--S-STTTT-------S--- CS SBP 46 CsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 srfh+lsefD++krsCr++L+ hn+r+r++++ Cse_sc001465.1_g080.1 130 ISRFHDLSEFDDRKRSCRQHLSAHNARQRRPHS 162 59***************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence
MQVRPTFAAD QNGAVNPQPL NKTATISVPL YPTTSPTIKR SRASYQSSQS PCCQVEGCNL 60 DLASAKDYHR QHRICANNSK SPKVVKLGWN VDFVNNVAGK LPLFKKNTHI GFVTHQLFLT 120 YNKLTLRWVI SRFHDLSEFD DRKRSCRQHL SAHNARQRRP HSEEIHFNSL RMSSSINGMN 180 KILYIKIELM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	159	RQHLSAHNARQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-25	SBP family protein