PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001511.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22720.2 Da    PI: 5.4698
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001511.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.13.5e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+k+ rqvtfskRrng+lKKA+EL  LCd++va+ +fs++gkl+e+s+
  Cse_sc001511.1_g010.1  9 KRIEDKTSRQVTFSKRRNGLLKKAYELAELCDVDVALFVFSERGKLQEFST 59
                           79***********************************************96 PP
2K-box21.97.2e-091041703399
                  K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              qRhl  +++++L++  L qL qqL++ l++++ +K+el +  ++ lq +e +l++e k++  +++
  Cse_sc001511.1_g010.1 104 MIQRHLEENNIKQLDITGLDQLVQQLNSFLEQVKIRKMELKMGVLKALQDQEMQLKKERKDMMDQIM 170
                            5689********************************************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MGRGKVELKR IEDKTSRQVT FSKRRNGLLK KAYELAELCD VDVALFVFSE RGKLQEFSTG  60
ESMAEILTRY QSYKKTEELT RIIVHESVAP QYRDVFTADE LTEMIQRHLE ENNIKQLDIT  120
GLDQLVQQLN SFLEQVKIRK MELKMGVLKA LQDQEMQLKK ERKDMMDQIM AMDRINNDSD  180
AAEPQSPVMG VQITW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-37MIKC_MADS family protein