PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001511.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 197aa MW: 22962.6 Da PI: 8.1836

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001511.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80	1.6e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k+ rqvtfskRrng+lKKA+EL LCd++va+ +fs +gkl+e+s+ Cse_sc001511.1_g040.1 9 KRIEDKTSRQVTFSKRRNGLLKKAYELAELCDVDVALFVFSGRGKLFEFST 59 79***********************************************96 PP
2	K-box	18	1.2e-07	106	172	33	99
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qRhl ++++ L++ L qLeqqL++ l+++ +K+el + ++ lq +e el++e k++ +++ Cse_sc001511.1_g040.1 106 MIQRHLEENNIKMLDITGLDQLEQQLNSFLQQVQIRKMELKMGVLKALQDQEMELKKERKYMMDQIM 172 6689*********************************************************999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGRGKVELKR IEDKTSRQVT FSKRRNGLLK KAYELAELCD VDVALFVFSG RGKLFEFSTG 60 DSKLASMAEI LTRYQSCKKI EKLKRIQESL APQYRDVFTA DELTEMIQRH LEENNIKMLD 120 ITGLDQLEQQ LNSFLQQVQI RKMELKMGVL KALQDQEMEL KKERKYMMDQ IMAMDRINND 180 SDAAEPQPPV MGFQITW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	LKKERKY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	9e-40	MIKC_MADS family protein