PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001525.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25399.9 Da    PI: 6.537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001525.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.22.8e-101050242
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            ie +  r+ t+ kR++g++ K   + +LC++e++ ii ++
  Cse_sc001525.1_g010.1 10 YIEQDGARKATYNKRKKGLMTKLDQITTLCGVEACAIINGP 50
                           5899999*******************************886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MPKRKGKNEY IEQDGARKAT YNKRKKGLMT KLDQITTLCG VEACAIINGP YKPGFEVWPN  60
DEGVLSVLNK FSSMSEMDRN KHKENKTRYL EHRLKKVAEQ IKKQMALNRG LEMDILMSDC  120
LSGKVSIADD LNLQNKQAIS SLADQNLLEI NERFELFKNG TPADAPPPPP PPPQPLKDVE  180
CYVPVMENQG TSKESETSWY PTDWLGDYNW DLMQWDGASS SKTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-30M-type_MADS family protein