PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001541.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 345aa MW: 37430.4 Da PI: 10.0405

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001541.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.8e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+ l+ +v ++G+g W+tI + R+ ++k++w++ Cse_sc001541.1_g030.1 5 KQKWTNEEESALKAGVVKHGSGKWRTILKDPEfshilYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGAPKQKWTN EEESALKAGV VKHGSGKWRT ILKDPEFSHI LYLRSNVDLK DKWRNMSVMA 60 NGWGSREKAR IALKRIHSGS KDDNPLALAN VDDTDDDSGD GRPLPSSSGS PQTGGSKRSM 120 IRLDNLIMEA ISNLKEPGGS NKTTIGSYIE EQYWAPPNFK RLLSMKLKFL TQTGKLVKTK 180 RRFRIASANV MVSDKKKIPS MLRLEGGRPS GSSPRFDKDD INVPTRGQID LELQKMRSMT 240 PQEAAAAAAQ AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRTAQRLSD 300 FGAGAVFRHS QECFVAYTCK TLLSRITIGF FGVASVSSTS ASTSS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGAPKQKWTN EEESALKAGV VKHGSGKWRT ILKDPEFSHI LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR IALKRIHSGS KDDNPLALAN VDDTDDDSGD GRPLPSSSGS PQTGGSKRSM  120
IRLDNLIMEA ISNLKEPGGS NKTTIGSYIE EQYWAPPNFK RLLSMKLKFL TQTGKLVKTK  180
RRFRIASANV MVSDKKKIPS MLRLEGGRPS GSSPRFDKDD INVPTRGQID LELQKMRSMT  240
PQEAAAAAAQ AVAEAEAAIA EAEEAAREAE AAEADAEAAQ AFAEAAMKTL KGRTAQRLSD  300
FGAGAVFRHS QECFVAYTCK TLLSRITIGF FGVASVSSTS ASTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.1	9e-91	MYB_related family protein