PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001563.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

TCP

Protein Properties

Length: 338aa MW: 37841.9 Da PI: 6.631

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001563.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.9	5.4e-32	44	177	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg. 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl ak++i+el+ ++ ++ + ++ + ++s++s++ Cse_sc001563.1_g050.1 44 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLQIPPGIFGQNLQAMLNVSSQSERg 131 689*************************************************************777774444444444444333334 PP TCP 89 ................kaaksaakskksqksaasalnlakesraka 118 + ks+a +++++++ + n ++e r+k Cse_sc001563.1_g050.1 132 egikssvsgvnwedywNPDKSKAIVQETSTDQDCEENDQEEARNKH 177 4566666677777777333333333333333333344444444333 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MKEADYETKQ EDGHDGSKIP KPHMTTSSWS RLKDPRIVRV SRAFGGKDRH SKVCTVRGLR 60 DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLDVAKHE IDELPPLQIP PGIFGQNLQA 120 MLNVSSQSER GEGIKSSVSG VNWEDYWNPD KSKAIVQETS TDQDCEENDQ EEARNKHDHH 180 GTFLQSSNFF GRNPNSSDLP GMLSNVVPNS SFPKWDPSNL TLSQFGSYGA VTPHQHNDAT 240 HNFNMNVAAL PSIPSGSQVL LYPPPPPAPQ THPYFPSHNH NSSEFDPKQL NFQMLSSSSS 300 SNFTPPLYTI NQGMRPFHLS MNPKFFSLED NGANEANK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-46	TCP family protein