PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001668.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HB-other

Protein Properties

Length: 1075aa MW: 117926 Da PI: 7.3193

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001668.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.3	9.6e-07	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ + + F + +s++e + +++ gLt +qVk +F +R+k ++ Cse_sc001668.1_g030.1 67 KRPRDLLNPKAIKHMHSIFSVKDEISKKETRAISALFGLTATQVKEFFNSQRTKVRR 123 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MANSQLAIVA SPNKTTSYES LLQSQKELIS KQINDLQNIV TLQCKLTGVN PLSQEMAAGA 60 LSIKIGKRPR DLLNPKAIKH MHSIFSVKDE ISKKETRAIS ALFGLTATQV KEFFNSQRTK 120 VRRFIRMSKE KAIQSAEGVQ EQDGSLADAS NQPVPLNSIG PDPLNYMGPV PLNSTDPVPL 180 NSTGPVPLNS TSGPVPLNST GPVPLDSTGP VPLNSTGPVP LNSTGPVPVN STGPVPLNSV 240 SPVPLNSMGP SSTEAPSSSK QDEVLPDTDD SEKYFIAHIF DLLRKEETFN GQVKLMEWIL 300 QMKNAAVLYW FLTNGGVMIL ASWLSQAAIE EQTTVLHVIL RVLCHLPLHK ALPAHMSAIL 360 QSVNKLRFYR GSDISKRAKT LLSRWSKMFA RSQAMRKSNA NISAVDAQNE MLLKQRQAYF 420 CVSGATYSLQ ENSENSSWSQ SVKLLTGPSD DSNMKLLKGG TSAHRGRRKV QLVEQPGQKP 480 ASRGPQVARL VSTAQSRPLS ADDIQKAKMR AQFMRSKYGE SYVSPQVKTE ALRASSTSQA 540 SKAHVQLKVE EHATSTPSMS PLAAKPLEQP KVEEHATSAS SITPLAAEPL IQPNVEEHKT 600 PVQPLSGDEL QEVPVNGKQI MNSEEPVWKK CKRLHISWVT PPEININAEW SVCSGENSKE 660 VDVQNNRIKR EKEVFYNSIL EIPPNPKEPW DREMDYDDSL TPEIPSVQLP DDEDNMVAEP 720 TEVAPDSTSN YAAGTSTVAE NSNKNMPEPD LELLAALLKN PEIVFALTAG QGGNLSNEQM 780 VKLLDAVKAN AASGGSVGSL VDGLVEKKQD QRVEVSLPSP TPSSNPVTSG WRQESATNPF 840 SRQSVTVKGD PYAIRGVYYQ ETSTHQPVAP ITHQRFSNMD PDQRNTPAAI NSVAASSLTQ 900 QAFSPATYQT FSNMVPERGL SLQGVNATSN DYFSSGHSGS QLQPQWQVAT EPRLSQVQSY 960 TGRESLASSQ YSYSDQNSSN YNPYGTTEYA QPAASRTGAS WAGNGRYSDQ PGFESWSPEN 1020 SPTRSHEYAD AWDYSDPKGR NYNYRPEMSR MQQDHSRYRD RGGRNDGSRW RDQRR

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MANSQLAIVA SPNKTTSYES LLQSQKELIS KQINDLQNIV TLQCKLTGVN PLSQEMAAGA  60
LSIKIGKRPR DLLNPKAIKH MHSIFSVKDE ISKKETRAIS ALFGLTATQV KEFFNSQRTK  120
VRRFIRMSKE KAIQSAEGVQ EQDGSLADAS NQPVPLNSIG PDPLNYMGPV PLNSTDPVPL  180
NSTGPVPLNS TSGPVPLNST GPVPLDSTGP VPLNSTGPVP LNSTGPVPVN STGPVPLNSV  240
SPVPLNSMGP SSTEAPSSSK QDEVLPDTDD SEKYFIAHIF DLLRKEETFN GQVKLMEWIL  300
QMKNAAVLYW FLTNGGVMIL ASWLSQAAIE EQTTVLHVIL RVLCHLPLHK ALPAHMSAIL  360
QSVNKLRFYR GSDISKRAKT LLSRWSKMFA RSQAMRKSNA NISAVDAQNE MLLKQRQAYF  420
CVSGATYSLQ ENSENSSWSQ SVKLLTGPSD DSNMKLLKGG TSAHRGRRKV QLVEQPGQKP  480
ASRGPQVARL VSTAQSRPLS ADDIQKAKMR AQFMRSKYGE SYVSPQVKTE ALRASSTSQA  540
SKAHVQLKVE EHATSTPSMS PLAAKPLEQP KVEEHATSAS SITPLAAEPL IQPNVEEHKT  600
PVQPLSGDEL QEVPVNGKQI MNSEEPVWKK CKRLHISWVT PPEININAEW SVCSGENSKE  660
VDVQNNRIKR EKEVFYNSIL EIPPNPKEPW DREMDYDDSL TPEIPSVQLP DDEDNMVAEP  720
TEVAPDSTSN YAAGTSTVAE NSNKNMPEPD LELLAALLKN PEIVFALTAG QGGNLSNEQM  780
VKLLDAVKAN AASGGSVGSL VDGLVEKKQD QRVEVSLPSP TPSSNPVTSG WRQESATNPF  840
SRQSVTVKGD PYAIRGVYYQ ETSTHQPVAP ITHQRFSNMD PDQRNTPAAI NSVAASSLTQ  900
QAFSPATYQT FSNMVPERGL SLQGVNATSN DYFSSGHSGS QLQPQWQVAT EPRLSQVQSY  960
TGRESLASSQ YSYSDQNSSN YNPYGTTEYA QPAASRTGAS WAGNGRYSDQ PGFESWSPEN  1020
SPTRSHEYAD AWDYSDPKGR NYNYRPEMSR MQQDHSRYRD RGGRNDGSRW RDQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-130	HB-other family protein