PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001697.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 560aa    MW: 62151.2 Da    PI: 7.9856
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001697.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23128229199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++v
  Cse_sc001697.1_g060.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfpkldynADPPVQ--TILAKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNNKKLVAGDSIV 213
                            89****************************996445444..8999******************************************* PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F +   +++ l+v+v+r+
  Cse_sc001697.1_g060.1 214 FLR--ADNGDLCVGVRRA 229
                            **3..477888****996 PP
2Auxin_resp116.42.5e-38269352183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++++Fev+Y+Prast+eF+vk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+++d+ rWpnS+Wr+L+
  Cse_sc001697.1_g060.1 269 AAKLAANGKPFEVFYYPRASTPEFCVKASSVKAAMRIQWCAGMRFKMAFETEDSSRISWfMGTISSVHASDQARWPNSPWRLLQ 352
                            78999*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    
MALMNSVKPS NSIVEKSLDS QLWHACAGGM VQMPLLNSKV FYFPQGHAEH AASGKVNFGD  60
FPQIPPYVLC QVLAINFMAD PDTDEVYAKL GLVPLKDHND FGSDDDGVLG YGQNKNGNVE  120
NQENPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYN ADPPVQTILA KDVHGQIWKF  180
RHIYRGTPRR HLLTTGWSNF VNNKKLVAGD SIVFLRADNG DLCVGVRRAK RGGNGVGSGY  240
CGLIREDENN IKLSKDSKGK FTGESVIEAA KLAANGKPFE VFYYPRASTP EFCVKASSVK  300
AAMRIQWCAG MRFKMAFETE DSSRISWFMG TISSVHASDQ ARWPNSPWRL LQVTWDEPDL  360
LQNVKRVNPW LVEMVSNVST MHISPFSPPR KKLRVPQPPD FPPISSLIAN NNIPASIQGA  420
RHNSSHFGIN NNHHPEFNKI QNLPYGMLNN DPLRRVSSKT LEPTKETNEK EKDSCLLTMG  480
KPSLKKTEDN EKDKRKPVFM LFGKPILTEQ QLSESWSGDG SVVLQNGPVE TSSDEAGPWS  540
SEQKSEFGLE TSHCKVLTES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein