PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001700.1_g070.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19682.8 Da    PI: 9.8151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001700.1_g070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-1531671046
                           HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           qvtfskRr  ++KKA+ LS+L ++e+a+++fs+t k 
  Cse_sc001700.1_g070.1 31 QVTFSKRRSSLFKKASGLSILYGVEIAIVVFSPTKKA 67
                           9********************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MVRCWCGRQA IVRTSWTAIN PGHRFYACPD QVTFSKRRSS LFKKASGLSI LYGVEIAIVV  60
FSPTKKAFPF GHHSVVMITN RYLRENLPSS SNTSLLMEAH LNAQIHELNR QLTYVDSQLD  120
IEKTISYELR KIRKEGQDNH LWEAPTESLG LEELEQLIAK LYIKMKTLTK N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-30M-type_MADS family protein