PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001824.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 743aa MW: 83677.5 Da PI: 4.8429

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001824.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	44.7	2.6e-14	585	628	4	47
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 +isled+sk++ +++ +AA L v+ ++LKriCR +G+ RWP+ Cse_sc001824.1_g010.1 585 SISLEDISKHYGKTMDEAAVILHVSRSTLKRICRSLGVFRWPYK 628 79****************************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MSIRLEEDNR SKVIDSLNSR YSCLHDPQSD GSTSFERPGL FNNNSVRRCL SPLWVYGNPE 60 VDEIPKSFSK LLDDQNIIDS QIIKDKVTAA LSGLRFREPR VLVQFWSPIT LRKRCLLTTL 120 DQPFGLGAVD EGLYLYRLES EQRMFVVDGE HREDIGPPGR VYREKLPEWS FDINMLSTRQ 180 NVKDWAASYN IHGYINLPVF EPESGCCVGV LELITSSNYI DYAFEVQEVS RALKIDSTSQ 240 EEKLHSPNVF EDLIFNVGDE KKQHEFDEIL CALKMICDVQ DIPLAQTWGL SGYNSVVANS 300 GNLERTCSSY NKKCMRKVCM STYGQPYYAR NLKMWGFVEA CTQQHLDKSQ GIVGRSLWSR 360 GSCYCEDVTK LGEDEYPLGY YAHVTKLGED EYPLGYYARV NGITSCLAVY LESVERDVEY 420 VIEFVLPPHK TNGTDLQSLV KTVKHVIEKA SSVKLGIMSS LQVIGGEPFN WNLESPPSPI 480 TLLDEKGEVP PDPGNQQPLV DNELTEVTIS KDQSVVAVNV EHIEHDYLEN EPSVFAAAAA 540 GTSESVIPSL EVDFEDSDIN KGKTITNHQN RSNKPGRKRK GTDGSISLED ISKHYGKTMD 600 EAAVILHVSR STLKRICRSL GVFRWPYKNG PDKSDSLIKA TYKENTNGPD KSDSLIKATY 660 KENTVSFSFM LSDGFVKLEE LITSKFQLKL GSFSLKYEDR DGDMILIACD SDLRESVDDF 720 KLPDGQTVIK LLVWPLVDKS PDA

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MSIRLEEDNR SKVIDSLNSR YSCLHDPQSD GSTSFERPGL FNNNSVRRCL SPLWVYGNPE  60
VDEIPKSFSK LLDDQNIIDS QIIKDKVTAA LSGLRFREPR VLVQFWSPIT LRKRCLLTTL  120
DQPFGLGAVD EGLYLYRLES EQRMFVVDGE HREDIGPPGR VYREKLPEWS FDINMLSTRQ  180
NVKDWAASYN IHGYINLPVF EPESGCCVGV LELITSSNYI DYAFEVQEVS RALKIDSTSQ  240
EEKLHSPNVF EDLIFNVGDE KKQHEFDEIL CALKMICDVQ DIPLAQTWGL SGYNSVVANS  300
GNLERTCSSY NKKCMRKVCM STYGQPYYAR NLKMWGFVEA CTQQHLDKSQ GIVGRSLWSR  360
GSCYCEDVTK LGEDEYPLGY YAHVTKLGED EYPLGYYARV NGITSCLAVY LESVERDVEY  420
VIEFVLPPHK TNGTDLQSLV KTVKHVIEKA SSVKLGIMSS LQVIGGEPFN WNLESPPSPI  480
TLLDEKGEVP PDPGNQQPLV DNELTEVTIS KDQSVVAVNV EHIEHDYLEN EPSVFAAAAA  540
GTSESVIPSL EVDFEDSDIN KGKTITNHQN RSNKPGRKRK GTDGSISLED ISKHYGKTMD  600
EAAVILHVSR STLKRICRSL GVFRWPYKNG PDKSDSLIKA TYKENTNGPD KSDSLIKATY  660
KENTVSFSFM LSDGFVKLEE LITSKFQLKL GSFSLKYEDR DGDMILIACD SDLRESVDDF  720
KLPDGQTVIK LLVWPLVDKS PDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-86	Nin-like family protein