PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001905.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 189aa    MW: 21429.3 Da    PI: 9.5619
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001905.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.5e-232103199
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+ +l+ sd++++g +++p++ ae++      ++++ s++l+ +d+ g +W++++iy+++++r++lt+GW+ Fv+ ++L  gD v+F 
  Cse_sc001905.1_g020.1   2 FCNTLIASDTSTHGGFSVPRRAAEDCfppldYKQPRPSQELVAKDLYGTEWKFRHIYQGQPQRHLLTTGWSAFVNKKKLVCGDAVLFL 89 
                            8899**************************945566778************************************************* PP

                            E-SSSEE..EEEEE-S CS
                     B3  84 ldgrsefelvvkvfrk 99 
                              + +++ l+++++r+
  Cse_sc001905.1_g020.1  90 --RGDDGVLRLGIRRA 103
                            ..34788899999997 PP
2Auxin_resp66.97e-23128185158
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserr 58 
                            +++++s++s+F+v+YnPr ++seF+v+++++ ++l++++s+GmRfkm++++ed   rr
  Cse_sc001905.1_g020.1 128 VVNSISQRSPFSVCYNPRDGSSEFIVPYNRFPNSLSCSFSPGMRFKMRVQSEDGGDRR 185
                            6899*************************************************87776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MFCNTLIASD TSTHGGFSVP RRAAEDCFPP LDYKQPRPSQ ELVAKDLYGT EWKFRHIYQG  60
QPQRHLLTTG WSAFVNKKKL VCGDAVLFLR GDDGVLRLGI RRASQVKVAS NLPSFCSQQL  120
NNFDFSFVVN SISQRSPFSV CYNPRDGSSE FIVPYNRFPN SLSCSFSPGM RFKMRVQSED  180
GGDRRRDIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.15e-86ARF family protein