PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001940.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 334aa    MW: 37210.7 Da    PI: 6.6946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001940.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-141562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ed++l+d+v  +G  +W++++   g+ R +k+c++rw +yl
  Cse_sc001940.1_g050.1 15 KGLWSPDEDQKLKDYVMNYGHSCWSSVPINAGLQRNGKSCRLRWINYL 62
                           678*******************************************97 PP
2Myb_DNA-binding475.8e-1568113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++  Ede +  ++++lG++ W+ Ia++++ gRt++++k++w+++l
  Cse_sc001940.1_g050.1  68 RGEFSMPEDETISSLHHLLGNK-WSQIAQHLP-GRTDNEIKNYWNSHL 113
                            7888999***************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MRCKASEKPC PKHKKGLWSP DEDQKLKDYV MNYGHSCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGE FSMPEDETIS SLHHLLGNKW SQIAQHLPGR TDNEIKNYWN SHLKKRIAKL  120
QHLQNNPKTD YISTNLRSTE PSSSCLNASS FINSSSADMN QLVPPASQIT TLPKILFADW  180
ISLDELRKDI GKSCDQPFSH GSSYEVSHMH DYHEVSTQES KDSQNCLISC SNNGDITSTT  240
PIVGKIEELE KLIIEGKVTL VDDDGKPLKK VDLKEKTHDT ATKPSSSSSP CSMVGNPFSN  300
VGDVIVSDSD DEEVLDPDNP MAKFLASNGG SHEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-58MYB family protein