PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc001941.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 1522aa MW: 170664 Da PI: 6.3523

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc001941.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	1317	1356	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eE + l+++ k++G++ Wk+Ia +mg + ++k+ w+ Cse_sc001941.1_g020.1 1317 FTPEELKTLKELYKKHGND-WKRIADEMG--KYMVHVKDAWRR 1356 8****************.******9..678888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1522 aa Download sequence
MKKINMKNDV VLCALMAVLL LVMLPFTTSL ADEGKALMSI KASFSNVVNV LLDWDVDQND 60 DLCSWRGVLC DNISTTVVAL NLSNLNLGGE ISPAIGDLRN LQSIDLQGNK LTGQIPDEIG 120 SCVSLILLDL SDNMLYGDIP FSISKLKQLE LLNLKNNQIT GPVPSTLTQI PNLKTLDLAQ 180 NQLTGEIPRL IYWNEVLQYL GLRGNSLTGT LSADMCQLTG LWYFDVRGNN LTGTIPDSIG 240 NCTSFEILDV SYNQITGEIP YNIGFLQVAT LSLQGNKLTG KIPEVIGLMQ ALAVLDLSEN 300 ELVGPIPPIF GNLSFTGKLY LHGNRLTGPI PPELGNMTKL SYLQLNNNQF TGGIPAELGN 360 LDQLFELNLA LNNLEGPIPE RISSCTALNQ LNVHGNFLNG SIPSGFRNLE SLTYLNLSSN 420 KFKGTIPFQL GRIINLDTLD LSSNQFSGPI PASIGDLEHL LTLNLSRNHL GGPIPQEFGN 480 LRSVQIIDMS FNKLRDAIPV EMGQLQNIIS LILNDNNLNG EIPNQLSNCF SLTNLNISYN 540 NISGVVPPSK TFSRFPSDSF LGNPLLCGNW LGSICDPYSP KRRALFSRTT VVCMTLGFVV 600 LVAMVVLTIL RSSKPRQYMK EPSKGIQGPP KLVVLHMDLA IHTYDDILRI TENFSEKYII 660 GYGSSSTVYK CALKNSRPIA IKRLYNQYQH NFQEFETELT TIGSIRHRNL VSLHGYSLSP 720 TGNLLFYDYM PNGSLWDLLH GPSKKVKLDW ETRHKIAVGA AQGLAYLHHD CNPRIIHRDV 780 KSSNILLDEN FEAHLADFGI AKSLPTTKTY ASTYVLGTIG YIDPEYARTS RLTEKSDVYS 840 FGIVLLELLT GKKAVDNESN LHQLILSKAD DNTVMEAVDP EVSVTCMDIS HVKKTFQLAL 900 LCTRRLPSER PTMHEVAGIL QSLLPAAPAL KTSLGPEKTK EYKQYVVGDE ANHPQKQQEE 960 TENSSDAQLH TLIIEDAETA DLDHSELLKR RVQSKNSIKS SSPQAPQIFV EAAGSLNENQ 1020 EFNSPISKFR SGSIKQSVAQ IEMNNQLKGE VEAQEMHKAG EYADASPVTM ETKSKNKKSE 1080 ITGGNDDNRH VEIDSSLPKE KKGHKRREKK KKKIELNEDG VEDEDRPHKG NLVNDDDVSM 1140 KDKKKKRKRK ISEKIQIEEN ENNRNDEPEL SREDSESDNV LNEIMTEEST PETQYDTEDN 1200 KGTKEKKKAN VKGSKVKNKT TESVENNKRK ATAKGDGLIR GKRFTQEEDE IIKEAVLNYM 1260 TAHDLGDDGL KMVLNCRSYP GMKQCWKEIA NCLPYRPITS VYHRAHVLFE RAETPGFTPE 1320 ELKTLKELYK KHGNDWKRIA DEMGKYMVHV KDAWRRIKLE NLKSGKWSQE EYQNLYDLVN 1380 LDLQMKLNSE KKSQHGMLRD NIPWTAISDK LSTRNDATCC TKWYRQLTSS LVAEKKWCDA 1440 DDYRMIGKLY ELDAACVDDV DWDSLLEHRT GDISRKRWDQ MVKHIGDYSS KLFAEQVDIL 1500 AKRYSPDLAE TREAWDNKPI VS

Sequence ? help Back to Top

Protein Sequence Length: 1522 aa Download sequence

MKKINMKNDV VLCALMAVLL LVMLPFTTSL ADEGKALMSI KASFSNVVNV LLDWDVDQND  60
DLCSWRGVLC DNISTTVVAL NLSNLNLGGE ISPAIGDLRN LQSIDLQGNK LTGQIPDEIG  120
SCVSLILLDL SDNMLYGDIP FSISKLKQLE LLNLKNNQIT GPVPSTLTQI PNLKTLDLAQ  180
NQLTGEIPRL IYWNEVLQYL GLRGNSLTGT LSADMCQLTG LWYFDVRGNN LTGTIPDSIG  240
NCTSFEILDV SYNQITGEIP YNIGFLQVAT LSLQGNKLTG KIPEVIGLMQ ALAVLDLSEN  300
ELVGPIPPIF GNLSFTGKLY LHGNRLTGPI PPELGNMTKL SYLQLNNNQF TGGIPAELGN  360
LDQLFELNLA LNNLEGPIPE RISSCTALNQ LNVHGNFLNG SIPSGFRNLE SLTYLNLSSN  420
KFKGTIPFQL GRIINLDTLD LSSNQFSGPI PASIGDLEHL LTLNLSRNHL GGPIPQEFGN  480
LRSVQIIDMS FNKLRDAIPV EMGQLQNIIS LILNDNNLNG EIPNQLSNCF SLTNLNISYN  540
NISGVVPPSK TFSRFPSDSF LGNPLLCGNW LGSICDPYSP KRRALFSRTT VVCMTLGFVV  600
LVAMVVLTIL RSSKPRQYMK EPSKGIQGPP KLVVLHMDLA IHTYDDILRI TENFSEKYII  660
GYGSSSTVYK CALKNSRPIA IKRLYNQYQH NFQEFETELT TIGSIRHRNL VSLHGYSLSP  720
TGNLLFYDYM PNGSLWDLLH GPSKKVKLDW ETRHKIAVGA AQGLAYLHHD CNPRIIHRDV  780
KSSNILLDEN FEAHLADFGI AKSLPTTKTY ASTYVLGTIG YIDPEYARTS RLTEKSDVYS  840
FGIVLLELLT GKKAVDNESN LHQLILSKAD DNTVMEAVDP EVSVTCMDIS HVKKTFQLAL  900
LCTRRLPSER PTMHEVAGIL QSLLPAAPAL KTSLGPEKTK EYKQYVVGDE ANHPQKQQEE  960
TENSSDAQLH TLIIEDAETA DLDHSELLKR RVQSKNSIKS SSPQAPQIFV EAAGSLNENQ  1020
EFNSPISKFR SGSIKQSVAQ IEMNNQLKGE VEAQEMHKAG EYADASPVTM ETKSKNKKSE  1080
ITGGNDDNRH VEIDSSLPKE KKGHKRREKK KKKIELNEDG VEDEDRPHKG NLVNDDDVSM  1140
KDKKKKRKRK ISEKIQIEEN ENNRNDEPEL SREDSESDNV LNEIMTEEST PETQYDTEDN  1200
KGTKEKKKAN VKGSKVKNKT TESVENNKRK ATAKGDGLIR GKRFTQEEDE IIKEAVLNYM  1260
TAHDLGDDGL KMVLNCRSYP GMKQCWKEIA NCLPYRPITS VYHRAHVLFE RAETPGFTPE  1320
ELKTLKELYK KHGNDWKRIA DEMGKYMVHV KDAWRRIKLE NLKSGKWSQE EYQNLYDLVN  1380
LDLQMKLNSE KKSQHGMLRD NIPWTAISDK LSTRNDATCC TKWYRQLTSS LVAEKKWCDA  1440
DDYRMIGKLY ELDAACVDDV DWDSLLEHRT GDISRKRWDQ MVKHIGDYSS KLFAEQVDIL  1500
AKRYSPDLAE TREAWDNKPI VS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1105	1112	KRREKKKK
2	1106	1148	RREKKKKKIELNEDGVEDEDRPHKGNLVNDDDVSMKDKKKKRK
3	1109	1151	RREKKKKKIELNEDGVEDEDRPHKGNLVNDDDVSMKDKKKKRK
4	1110	1152	RREKKKKKIELNEDGVEDEDRPHKGNLVNDDDVSMKDKKKKRK
5	1143	1148	KKKKRK
6	1143	1149	KKKKRKR
7	1144	1150	KKKKRKR
8	1145	1150	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-112	MYB_related family protein